Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20340 60 / 1e-12 unknown protein AT4G21920 54 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G015900 [exp] 140 / 6e-44 AT4G21920 55 / 1e-10 unknown protein Potri.011G139400 [exp] 47 / 1e-07 AT3G20340 47 / 5e-08 unknown protein Potri.014G153200 [exp] 38 / 0.0005 AT3G21680 45 / 8e-07 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001143 [exp] 91 / 2e-24 AT4G21920 66 / 9e-15 unknown protein Lus10002068 [exp] 90 / 3e-24 AT4G21920 65 / 1e-14 unknown protein Lus10006774 [exp] 70 / 4e-16 AT4G21920 62 / 5e-13 unknown protein Lus10021518 [exp] 67 / 5e-15 AT3G20340 71 / 7e-17 unknown protein Lus10039676 [exp] 42 / 2e-05 AT3G10120 56 / 2e-10 unknown protein Lus10027167 [exp] 42 / 2e-05 AT3G10120 52 / 4e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G003100.1 pacid=42780611 polypeptide=Potri.011G003100.1.p locus=Potri.011G003100 ID=Potri.011G003100.1.v4.1 annot-version=v4.1 ATGGGAAATTGCTGTAGAAGTGCATCATCATCGGTATGGGCCGGTGATGACTGGGGGTCGATGATACATGATAAGCATCAAGTCACAAGGTTTGATGAAG CTGATGATCACGAGGAACATGGCGCTAGCATTGGAAGAAGGAGGCCGCTTGACACGAGTTGTTCGTCTTCAGGCTCTACCAGAGAGGTGAAGATCAAGAT TACAAAGAGGGAACTAGAAGAGATAATAATGGCAAGGGTTAACATGCAGGGGTTATCCATGGAAGAAGTCCTGCTGGCTAGGTCGATAGAGTACTCTAGT AGTGATCATGAATTTGAAATGGAGCATCCTCATGGCGACTGGAAGCCTTCCCTCCAAAGTATTCCTGAGCTGAATTAG
AA sequence Show only first row Show all	>Potri.011G003100.1 pacid=42780611 polypeptide=Potri.011G003100.1.p locus=Potri.011G003100 ID=Potri.011G003100.1.v4.1 annot-version=v4.1 MGNCCRSASSSVWAGDDWGSMIHDKHQVTRFDEADDHEEHGASIGRRRPLDTSCSSSGSTREVKIKITKRELEEIIMARVNMQGLSMEEVLLARSIEYSS SDHEFEMEHPHGDWKPSLQSIPELN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20340			unknown protein		Potri.011G003100 [exp]	0	1
					Potri.001G045301 [exp]	1.41	0.9835
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.002G098400 [exp]	3.46	0.9689	AT2.2
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.005G081300 [exp]	4.12	0.9486
AT5G60700			glycosyltransferase family pro...		Potri.004G212000 [exp]	4.47	0.9588
					Potri.001G045901 [exp]	5.29	0.9603
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.011G112400 [exp]	8.83	0.9334
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138900 [exp]	8.94	0.9258	DREB38
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037600 [exp]	9.16	0.9680
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045600 [exp]	10.86	0.9694
AT5G57500			Galactosyltransferase family p...		Potri.018G094000 [exp]	12.04	0.9366

Compare expression of checked genes

Potri.011G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.