Plant FIBer expression Database

Potri.011G003200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50660 350 / 9e-111 unknown protein
AT3G20350 298 / 1e-91 unknown protein
AT3G11590 124 / 2e-29 unknown protein
AT1G11690 93 / 5e-21 unknown protein
AT5G22310 85 / 3e-17 unknown protein
AT5G41620 72 / 5e-13 unknown protein
AT1G64180 57 / 2e-08 intracellular protein transport protein USO1-related (.1)
AT2G46250 52 / 1e-06 myosin heavy chain-related (.1)
AT1G64690 42 / 0.0008 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G015800
[exp]
718 / 0 AT1G50660 390 / 1e-126 unknown protein
Potri.011G090100
[exp]
374 / 1e-120 AT1G50660 689 / 0.0 unknown protein
Potri.004G199500
[exp]
126 / 5e-30 AT3G11590 399 / 6e-131 unknown protein
Potri.016G074300
[exp]
125 / 7e-30 AT3G11590 560 / 0.0 unknown protein
Potri.006G207800
[exp]
122 / 8e-29 AT3G11590 582 / 0.0 unknown protein
Potri.009G160900
[exp]
113 / 4e-26 AT3G11590 399 / 9e-132 unknown protein
Potri.001G096200
[exp]
92 / 4e-19 AT5G41620 523 / 6e-180 unknown protein
Potri.003G135000
[exp]
89 / 3e-18 AT5G41620 494 / 1e-167 unknown protein
Potri.003G147900
[exp]
80 / 3e-16 AT1G64690 66 / 2e-12 BRANCHLESS TRICHOMES, branchless trichome (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040076
[exp]
353 / 5e-112 AT1G50660 756 / 0.0 unknown protein
Lus10021521
[exp]
348 / 3e-109 AT1G50660 750 / 0.0 unknown protein
Lus10032637
[exp]
311 / 2e-96 AT1G50660 625 / 0.0 unknown protein
Lus10043111
[exp]
294 / 5e-90 AT1G50660 616 / 0.0 unknown protein
Lus10002069
[exp]
145 / 3e-37 AT1G50660 147 / 6e-38 unknown protein
Lus10021324
[exp]
122 / 2e-28 AT3G11590 530 / 3e-180 unknown protein
Lus10017001
[exp]
120 / 4e-28 AT3G11590 587 / 0.0 unknown protein
Lus10013311
[exp]
100 / 1e-21 AT3G11590 332 / 1e-105 unknown protein
Lus10013312
[exp]
99 / 1e-21 AT3G11590 285 / 1e-88 unknown protein
Lus10005200
[exp]
99 / 3e-21 AT3G11590 322 / 1e-101 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G003200.1 pacid=42781486 polypeptide=Potri.011G003200.1.p locus=Potri.011G003200 ID=Potri.011G003200.1.v4.1 annot-version=v4.1
ATGAACTTATTCAAGATGGCAACAAGAGCAGACATTCTTGCCAGCTCCTGCCGCCGCCGGAGGAACACCACCGTATCCGATCACCGGAAGTATGGAACCA
CCCCAGCAACCCCTTTTTTGCATTGGAAGCTTATTCAAGATGGTAACAAGAGCAGACATTCTGCTGTCTCCAGCAGTGGTGGCAGCGGAGGAGCGGGGGC
TGGAAAGAGAGGTGGCGGTGTTAGTTGTAGTGGCAGTGGGAATTCTGTTTCGGCTAGGAAGCTCGCCGCTGGCCTGTGGAGGCTGAGGTTGGCAGGTGGT
GGTGGTGGTGGAGGTGATAAAGGTTTGAACTTGAGGAAGGGGAAAACTGATGAATTGGGGTTAGAGATTAGCAGCGAATATGGCGCAGAGAAAATGAATC
TTTTGCGCACCCCTGAATTCGTGTCCAATTCAAACCATGGGATCCTGTGCAAGATTGAATCCCCATCACTGTATACTAAGCATAACATGGAGGGTGCAAC
AAAGTGGGATCCGAGATGCTCAGGGATATGCAGTGACATCTTCTGCTTTTATAGCCATCCTAAACTTCTCGAAAATCATGTTGCTATGGTGCCTGCTTTT
GCCATGCACGCAGAACTAGTGCAAGCTCGATTGCGCATTCATGAGCTTGAAGCCAACTGCCAGTCTTCTAAGAAAAAAATCAAACACTTACTGAAGAAGC
TCGGAGAAGAAAGAACCTCATCGCAGAGCAGTGAACCTCAGAAAATTCGTGCAGTTATTGATGTTTTAGACAATCAATTAAGCAGGGAAAGAAAAAAACG
TCAAAAGCTGGAAATTCTCAATTCTAAATTAATCACTGAGTTGGCAAATGTCAAATCATCTGCAAAGCAGTTCAAGAAAGACTATGAGGAACAAAAAAGA
GCCAGAGAAATAATGGAGAAAGTTTGTAATGAACTTGCCAATAAAGTTGCAGAAGATAAAGCTGAAGTTGAAACATTCAAGACTGAGTCCATCAAGATTC
AGGAAGAAATGGAAGAAGAGAGGAAGATGTTGCAGGTGGCTGAGGTTTGGCGTGAAGAACGTGTCCAGATGAAGCTGATTGATGCAAAATTGGCCCTTGA
AGATAAGTATTTCCAAATGAACAAGTTAATAGCAGACCTTGAAACTTTTCTGAGGTCAAGAATTGCCACCTTGGATGTGATGGAGTTAAGGACCGCCCAT
TCAATCAGACAAGCAGCTAAATTGGTAGATGTTAAAGAGATAAAGGAATTTTCTTATAACCCGCCGAAATCAAGTGACATATACTCTATTTATCAAGAAC
TCGAGCAAATAGAAGCCAATGAAAGGGAGATTGAAGAATGCAATAAGAGCAGCCCTGCAAGCAATGCTTCCAAACTCCAGTTTGCCAGTTCGGATTTTAA
TGAGCACTACTACCATTCTTTGCAGCAAGGGCCGACTATTATTATTGATGATAACTGTCATTTAGAAGAAGATGCAAGAGGCCACCACGCTGTGAATCAC
GCTGAGGATCAAGGTTCAAGTTATTCCCATGATGAGAATCACCTCTCAGTTAACAAGCTTACACAAAGCAAAAATGATTGGCAGGTTGCAAGAGAATGTG
ATGAGAATGCTCCTCGGAATTCTCCAGACACACAAAGTAGTGACGTCTATTTGGTACCAGAAGAATCAATGTGTAAGGCATCTGCCATATCTAAGCTTTC
GAGATCTGGCCAATATAATAACAAATGCTCAGAGATAACAGCTGATGACAGTGATGGAATGGTCTTGAGCGAGAACATTTCTAATAAGGAGACTTATCCA
AGAAGAAAGTCATGGGAAGATAGGCTTCGGCACCAAGATTCTGTGGAGCAGTGGAGCTCACCAGAGTTAGTGAATCCACATGTTACTCATGGAATAAGAG
AACGCATTAAAAGGCCACGAGCTACCCAAAAGAATAGCTTGAAGGCCAAGCTTCTGGAAGCCAGGATGGAAAGCCAGAAAACTCAGTTGCGCGGTGTTCT
TAAACAGAAGACTTAG
AA sequence
>Potri.011G003200.1 pacid=42781486 polypeptide=Potri.011G003200.1.p locus=Potri.011G003200 ID=Potri.011G003200.1.v4.1 annot-version=v4.1
MNLFKMATRADILASSCRRRRNTTVSDHRKYGTTPATPFLHWKLIQDGNKSRHSAVSSSGGSGGAGAGKRGGGVSCSGSGNSVSARKLAAGLWRLRLAGG
GGGGGDKGLNLRKGKTDELGLEISSEYGAEKMNLLRTPEFVSNSNHGILCKIESPSLYTKHNMEGATKWDPRCSGICSDIFCFYSHPKLLENHVAMVPAF
AMHAELVQARLRIHELEANCQSSKKKIKHLLKKLGEERTSSQSSEPQKIRAVIDVLDNQLSRERKKRQKLEILNSKLITELANVKSSAKQFKKDYEEQKR
AREIMEKVCNELANKVAEDKAEVETFKTESIKIQEEMEEERKMLQVAEVWREERVQMKLIDAKLALEDKYFQMNKLIADLETFLRSRIATLDVMELRTAH
SIRQAAKLVDVKEIKEFSYNPPKSSDIYSIYQELEQIEANEREIEECNKSSPASNASKLQFASSDFNEHYYHSLQQGPTIIIDDNCHLEEDARGHHAVNH
AEDQGSSYSHDENHLSVNKLTQSKNDWQVARECDENAPRNSPDTQSSDVYLVPEESMCKASAISKLSRSGQYNNKCSEITADDSDGMVLSENISNKETYP
RRKSWEDRLRHQDSVEQWSSPELVNPHVTHGIRERIKRPRATQKNSLKAKLLEARMESQKTQLRGVLKQKT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50660 unknown protein Potri.011G003200
[exp]
0 1
AT2G36870 XTH32 xyloglucan endotransglucosylas... Potri.006G122900
[exp]
6.63 0.8252 Pt-XTH32.1
AT5G63090 AS2 LOBB, LOB Lateral organ boundaries (LOB)... Potri.015G082200
[exp]
18.70 0.7752
AT3G13960 GRF ATGRF5 growth-regulating factor 5 (.1... Potri.018G065400
[exp]
18.70 0.7681
AT1G48405 Kinase interacting (KIP1-like)... Potri.015G030100
[exp]
21.77 0.7955
AT5G50570 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROT... Potri.001G058600
[exp]
22.04 0.7790
AT5G49700 AT-hook Predicted AT-hook DNA-binding ... Potri.001G275700
[exp]
37.94 0.7531
AT1G68800 TCP TCP12, BRC2, TC... BRANCHED 2, TCP domain protein... Potri.010G130200
[exp]
44.15 0.7457 WFCYC1.1
AT3G62630 Protein of unknown function (D... Potri.005G019600
[exp]
45.39 0.7532
AT1G80133 unknown protein Potri.018G130700
[exp]
47.62 0.7223
AT4G28250 ATHEXPBETA1.6, ... expansin B3 (.1.2) Potri.013G134300
[exp]
56.16 0.7373 PtrEXPB3,Pt-EXPB1.3

Potri.011G003200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.