Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64570 504 / 1e-155 DUO3 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G015034 [exp] 401 / 4e-130 AT1G64570 151 / 1e-41 DUO POLLEN 3, Homeodomain-like superfamily protein (.1) Potri.004G015001 [exp] 297 / 8e-92 AT1G64570 69 / 3e-13 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002076 [exp] 816 / 0 AT1G64570 612 / 0.0 DUO POLLEN 3, Homeodomain-like superfamily protein (.1) Lus10001147 [exp] 641 / 0 AT1G64570 540 / 4e-171 DUO POLLEN 3, Homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G003500.5 pacid=42781606 polypeptide=Potri.011G003500.5.p locus=Potri.011G003500 ID=Potri.011G003500.5.v4.1 annot-version=v4.1 ATGGCTGAGATTTATGTTGAAGGGAGTGATTTAAAAGCGAATGAGAATGAGGAAGAGGATGAGGAGGAAGATATGGATTTTAATCCCTTTTTAAAGGGAA CGCCTTCGCCGGAGGCGTCGTCGAGTTTGAGCTCTGAAGTTGAAGGTTTGGAGGAGGGTGTGAAGGAGGTGAGGAGTGGTGAGGTGCGAAATTATGATGT TGGAGATGTGACTCATGAGGAGGAGGTTGTTATGGCAAGTGGGGTTGAGGTGGGAAGTGGAAAGGAAGGGGAGAGTGGTGAGGATAGGAGGGGTAAGAGG AGGAAATTGGGTTTTGGGTCGAATGTGGAAGATGGGAATGAGAGGGAGAAGGAGAGCGGGGTGAGTAAGGTTGTGTTGGATGTGGATGATGATGAAGATG CTATTTGTAAGAGGACAAGGGCTAGGTATTCGCTTGCGAGTTTTACCCTTGATGAGTTAGAGATGTTTTTGCAAGAGAGTGATGATGAAGATGATCTTCC GAATGTTGATGATGAGGTGGAGTATAGGAAATTTCTTGCGGCCGTTTTGCTTGGTGGAGATGGGGATGGTCAGGCTAATGAAGAAAATGAAAATGTTGAT GATGATGATGAGGATAATGATGCGGATTTTGAGATTGAACTTGAGGAGTTGCTTGACAGTGATGTTGATAATGGTGCAAGGGATGAGGGTCAGAGAGTTG AATATGAGAGAGGTGGACGAAGGCCGGAGACTAGGCAGAAAAAACGTCAAAAGGCTTCTGCTCAATATAAGAAGAAGCTTTTAGAACAGTCAAAAAGGCC GTTGCGCCCTCTTTTACCAGTTTTGCCTAATGGATTTGCTCCTCCTTTTAGTGCTGTCAATGAGAAAGCTTTGGCACCTAAGCCTGCTCCTAGCTATGCG TCTTCTGCAGAAGATAGTGGTAAAATAAATGGGTTTACTCCACAGCAAATAAACCAGTTGCATTGTTTGATACATGAACATATTCAGCTACTTATTCAAG TATTCTCTCTTTGCATTCTTGATTCTTCCCGGCAACACCTTTCCTCCCAGGTTCAGGGATTGATTTTTGAGATGCTTCACAAACGTGATAATGTAATAGC CTGCAAAAGAGTTCCATATCCTGGTAATTGCTTTTGTCCTCCATATATGTGCTCATCTGTGGCAGATGAACTGCCCAATATTCGGCCAGGACAGTGCACC TACGAATCACCCCCTGTTCTAAACTTGCAGATGTCAGTCTCTCAAAATACCCCCGTTCCACAAAGAAGAGATGAGCATGCATGTAATGAGCAAACGAGTT CTTCACAGATTGCAGGCTCTTCTTGGAGTCCTTACATAAATGGTCCAATAGTATCAATTCTGGATGTAGCCCCGCTCAATTTAGTTGGAAGATATATGGA TGATGTTTACAATGCTGTTCGGGAGTATCGGCAGCGTTTTCTGAATTCCAGTTCTGAAACATGGAATGAAAAGGAACCGCTCTTCTACCTTCCACATTCT CCCTTATTAGGGGAGGCGAATGAAGTTATGAGAGGAAACGTTCCCCTTGCTGCCAATAGAGTGACATCCTCAACTGGTCAACAACCACCCAAGAAGACAT TGGCTGCTTCCATTGTTGAAAGTACCAAGAAGCAATCAGTTGCACTAGTCCCAAAGGATATTAGCAAGTTAGCTCAGCGATTTTTCCCACTGTTCAATCC AGTACTATTTCCACATAAACCACCCCCTGCGGCTGTTGCAAATCGGGTCCTTTTTACTGATTCAGAGGACGAATTGTTGGCACTAGGGATCATGGAATAT AATACAGATTGGAAGGCAATTCAACAACGCTTTCTTCCATGCAAATCTAAGCATCAGATTTTTGTTAGGCAGAAAAATCGTTGTTCATCTAAGGCACCAG AAAATCCGATAAAGGCAGTTCGGAGAATGAAAACCTCCCCATTGACTACAGAAGAGACAGAACGCATTCAGGAGGGACTCAGGGTTTACAAACTTGATTG GTTGTCTGTATGGAAGTTTGTTGTTCCACATAGGGATCCTTCTTTATTACCTCGGCAGTTGCGGATTGCCCTTGGAACTCAAAAGTCATATAAGCAAGAT GCTGCTAAAAAGGAGAAAAGGCGGATATCTGAAGCCAGGAAACGATCAAGAACCACAGAATTATCAAATTGGAAACCAGCTTCTGACAAGGAAGACAATC AGGCTGACAGAACTGGTAAAGGAAATAGTAGTGGAGATGATTGTGTTGATAATGTAAACGAAGCTTATGTTCATCAGGCATTTTTATCTGATTGGAGGCC AGGTTCCTCGGGTCTCATTTCCAGTGATACAATTTCAAGAGAAGATCAAAATACCAGAGAGCATCCAAACAATTGTAGGCCTGGAGAGCCTCAACTCTGG ATCGATAACATGAATGGGCTTCCATATGGATCCAGCTCTCACCATTATCCTCTTGCTCATGCTAAACCCTCTCCTAATACCATGCTACCAAACTATCAAA TTTCTAATATGTCAGTGAGTATCTCCAAGCCTCAAATACATTTGCGGCCATACCGGAGTCGTAAAACTGATGGTGTGCACTTAGTGAGATTGGCACCAGA TTTGCCCCCTGTGAATCTTCCACGGTCTGTTCGTGTAATTTCTCAGTCAGCTTTCGAAAGGAACCAATGTGGATCATCTATCAAAGTATCTACCTCGGGA ATTCGGACTGGTGATGCTGGAAAAAACAATATTGCTGCTCAGCTTCCACATATTGGAAATTTGAGAACCCCCAGTTCAGTAGATTCAAGAAGGGATAAGA CTAATCAAGCAGCAGACCATGTCACAGATTCACACCCAGAACAATCTGCCATTGTTCACAATGTGTGTACTGCTGAAGAAAGAGGCACTGATTCTGACCT TCAGATGCATCCATTACTGTTCCAGGCCCCAGAAGGTGGCTGTCTGCCATATTTACCTTTGAGCTGCAGCAGTGGCACATCTAGTTCTTTTAGTTTCTTT TCAGGGAATCAACCCCAGTTGAATCTAAGTCTCTTTCATAATCCCCTCCAAGCAAACCATGTTGTTGATGGGTTTAACAAGTCTTCGAAGAGTAAGGACT CCACTTCAGCATCATGCAGTATTGACTTCCACCCACTTCTGCAAAGAACTGATGAGGAAAATAACAACTTGGTGATGGCATGCTCGAATCCAAACCAATT TGTTTGTTTGAGTGGTGAATCTGCTCAATTTCAAAATCATTTTGGTGCGGTCCAGAATAAGTCATTTGTCAATAACATCCCAATTGCTGTTGACCCTAAA CACTCTAGCTCTAATGAGAAAGCTAATGACCTGGACTTGGATATCCATCTAAGCTCTAATTCTGCAAAGGAGGTATCTGAGAGAAGTAGAGATGTTGGTG CAAATAACCAACCAAGGTCAACAACAAGTGAACCAAAGTCTGGAAGGAGAATGGAAACTTGTAAAATAAACAGCCCACGTGATCAGCACAATGAACATCC CACGGTTCATAGCAACCTTGTTTCAGGTGCTGATGCATCACCTGTCCAAAGCAATAATGTCAGCACATGCAACATGGATGTTGTTGGCGACCAATCTCAT CCAGAAATTGTGATGGAGCAAGAAGAGCTGAGTGACTCAGATGAAGAAATTGAAGAAAATGTAGACTTTGAGTGTGAGGAGATGGCTGATTCTGATGGGG AGGAAGGTGCAGGTTGTGAACCAGTTGCTGAGGTGCAAGATAAGGATGCTCAAAGTTTTGCAATGGAAGAAGTTACAAATGCTGAAGATTATGGTGATCA ACAATGGAAGTTGAGGAGCCCTGTTCATTCTCGTGGCAAGCCTTCTATTCTTAGAAAGGGCAGTCCTTTATTAAACCTGAGTCTGACAAGCTTAGGGAAG GAGACTACAAGTAGTTCTTGGTTAAGTTTAGATTCACGTGCAGCTGTTGACTCTCCAAGAATGAAGACTCTGCATGAAAAGGGTGCAATTAATGACAGCC CCGCAGCCAAAAATTTATCTCCTTGTCGTCCCAACAGATTGTGCAAGAAGACAACACCGATCACAAAAGTTGAAACACAGAAGAATGTTTCTGACATGGC ACAGCAACTTAGTCTGGGTCCTCTAGCTGTTTCAACACTGAGGAAACCCAGGAAGCGTATGTGCCGAACAAATACAAATTTGGGCACTCGAACAGTTGCT GAAAATGGTGGAACAAATACAAAATTGGGCACTGGAACAGCCACCGAAAATGGCGGGCTCGATCAAGATAAGTTCGGTTGA
AA sequence Show only first row Show all	>Potri.011G003500.5 pacid=42781606 polypeptide=Potri.011G003500.5.p locus=Potri.011G003500 ID=Potri.011G003500.5.v4.1 annot-version=v4.1 MAEIYVEGSDLKANENEEEDEEEDMDFNPFLKGTPSPEASSSLSSEVEGLEEGVKEVRSGEVRNYDVGDVTHEEEVVMASGVEVGSGKEGESGEDRRGKR RKLGFGSNVEDGNEREKESGVSKVVLDVDDDEDAICKRTRARYSLASFTLDELEMFLQESDDEDDLPNVDDEVEYRKFLAAVLLGGDGDGQANEENENVD DDDEDNDADFEIELEELLDSDVDNGARDEGQRVEYERGGRRPETRQKKRQKASAQYKKKLLEQSKRPLRPLLPVLPNGFAPPFSAVNEKALAPKPAPSYA SSAEDSGKINGFTPQQINQLHCLIHEHIQLLIQVFSLCILDSSRQHLSSQVQGLIFEMLHKRDNVIACKRVPYPGNCFCPPYMCSSVADELPNIRPGQCT YESPPVLNLQMSVSQNTPVPQRRDEHACNEQTSSSQIAGSSWSPYINGPIVSILDVAPLNLVGRYMDDVYNAVREYRQRFLNSSSETWNEKEPLFYLPHS PLLGEANEVMRGNVPLAANRVTSSTGQQPPKKTLAASIVESTKKQSVALVPKDISKLAQRFFPLFNPVLFPHKPPPAAVANRVLFTDSEDELLALGIMEY NTDWKAIQQRFLPCKSKHQIFVRQKNRCSSKAPENPIKAVRRMKTSPLTTEETERIQEGLRVYKLDWLSVWKFVVPHRDPSLLPRQLRIALGTQKSYKQD AAKKEKRRISEARKRSRTTELSNWKPASDKEDNQADRTGKGNSSGDDCVDNVNEAYVHQAFLSDWRPGSSGLISSDTISREDQNTREHPNNCRPGEPQLW IDNMNGLPYGSSSHHYPLAHAKPSPNTMLPNYQISNMSVSISKPQIHLRPYRSRKTDGVHLVRLAPDLPPVNLPRSVRVISQSAFERNQCGSSIKVSTSG IRTGDAGKNNIAAQLPHIGNLRTPSSVDSRRDKTNQAADHVTDSHPEQSAIVHNVCTAEERGTDSDLQMHPLLFQAPEGGCLPYLPLSCSSGTSSSFSFF SGNQPQLNLSLFHNPLQANHVVDGFNKSSKSKDSTSASCSIDFHPLLQRTDEENNNLVMACSNPNQFVCLSGESAQFQNHFGAVQNKSFVNNIPIAVDPK HSSSNEKANDLDLDIHLSSNSAKEVSERSRDVGANNQPRSTTSEPKSGRRMETCKINSPRDQHNEHPTVHSNLVSGADASPVQSNNVSTCNMDVVGDQSH PEIVMEQEELSDSDEEIEENVDFECEEMADSDGEEGAGCEPVAEVQDKDAQSFAMEEVTNAEDYGDQQWKLRSPVHSRGKPSILRKGSPLLNLSLTSLGK ETTSSSWLSLDSRAAVDSPRMKTLHEKGAINDSPAAKNLSPCRPNRLCKKTTPITKVETQKNVSDMAQQLSLGPLAVSTLRKPRKRMCRTNTNLGTRTVA ENGGTNTKLGTGTATENGGLDQDKFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Potri.011G003500 [exp]	0	1
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	1.73	0.8776
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.005G182100 [exp]	1.73	0.8970
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	2.00	0.8759
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	3.74	0.8779
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.008G111100 [exp]	5.47	0.8448
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.006G047700 [exp]	6.00	0.8598
AT3G50370			unknown protein		Potri.007G043300 [exp]	8.12	0.8602
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	8.66	0.8634
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	10.90	0.8601	CHR928,PIE1.4
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	13.67	0.8439

Compare expression of checked genes

Potri.011G003500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.