Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11710 681 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 295 / 6e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 282 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 268 / 5e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 249 / 7e-73 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G02150 243 / 2e-70 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 237 / 1e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 236 / 7e-68 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 232 / 3e-67 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G59900 236 / 4e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 327 / 6e-102 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 303 / 1e-93 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 257 / 2e-75 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 256 / 5e-75 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 251 / 2e-74 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 251 / 2e-74 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 250 / 5e-74 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 249 / 8e-74 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 248 / 3e-73 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007468 [exp] 314 / 5e-97 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 280 / 9e-85 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 249 / 7e-71 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 233 / 4e-68 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027916 [exp] 236 / 8e-68 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032174 [exp] 231 / 4e-67 AT5G38730 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 233 / 4e-66 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 232 / 2e-65 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 229 / 2e-65 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 231 / 4e-65 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.011G003700.1 pacid=42781256 polypeptide=Potri.011G003700.1.p locus=Potri.011G003700 ID=Potri.011G003700.1.v4.1 annot-version=v4.1 ATGTTATTAAGCTCTTTTTTAATTAAAAGAAAGTGTTTCTTGGAACGTAGTTTTCATTTGGGTAAGAGCATTTTGAACCCGATTTCTGATGATGTTGTTC TTAGAGCTATTTGTGTTAATCTCAAACAAAGGAGATGGAATTTCTTGGAGAAAAATTTGGCGAGTCTAACAAATGCATTAGTGAGTCGTGTTGTTTGTGA GTTTCGGAACACGCCTCAGTTAGTTTTGGAGTTTTACAATTGGGTTGGAGAGAAGAAGAGTGTTTTGCACTCTTTGGAGATTTCATGCAGTGTAATTCAT GTTCTGGTTAATTCGAGGAGATATGACGATGCCTTGTCTCTTATGGGGAATTTAATGACTGTAAATGGCTTATCTCCTCTGGAAGTTCTAGAAGCATTGA ATAATAGTTATGGAATCTGTGAATCAAATCATGCTGTTTTTGATGCATTGGTTCGTGCTTGTACTCAAATAGGGGCTACTGTGGGTGCTTGTGAAGTGAT CAAGAAGTTGCAAATAGAGGGTTGCTGGGTTACAATTCATGCCTGGAATAACTTTTTGAGCCATCTCATTAAGGTGAATGAGATCCATAGGTTTTGGATC GTGTATAAGGAAATGGTTTCTTATGGGTATATGGAGAATGTAAATACTTTCAACGTGGTTGTGCATGCTCTTTGTAAGGATTGTAAATTACAAGAAGCAC TGTCTGTGTTCTATCGAATTCTGAAGAGTGGTATTTGGCCTAATGTTGTTACTTTTAACATGATGGTTGATGGAGCTTGCAAGATGGGTGACATGGACCT TGCCTTGAAGCTTGTTAGGAAGATGGAAATAATGTCTGCAGGATCTATTAAGCCCAATTCTGTAACTTATAACAGTCTCATCGATGGGTTTTGCAAAATA GGGGGGATAACTGTGGCAGAAGAACTTAGGAATGAAATGATGAAAATAGATATTGAGCCTAATGTGAGGACCTATGCAACCATGATTGAAGGGTATTCAC GAGCAGGGTGTTTGGAGGAGGCACTTAGGTTATGTGATGAAATGGTGGAAAGGGGATTGCTGCCGAATTCTGTGGTGTATAACTCAATTATGCATTGGCT TTACATGGAAGGAGACGTGGATGGAGCTTCTTTGGTATTCACTGACATGTCAGATAAGCAGATACCCCTTGATAAATTCACCTGTTCAATCCTCACAAGG GGTCTTTGCAGAAATGGCTATATAACCACAGCTCTTAAATTCCTTAACCAAGTTCTAGAAAATAACCTCATTGAAGATGCATTTTCACACAATATTCTTA TCAATTTCTTATGCAAAAGCAACAACTTTGCTGCAGCCAGGCAACTGTTGGCCAGGATGTATGTACGTGGCTTGGTTCCTGATGTTGTTACATTTGGTAC TTTGATCGATGGGCACTGCAAGGAAGGGAACATTGAAAGTGCAGTTCAGGTCTATGACAAAATGGTGAAGGGTGAAGAAAAACCCAACTTGTTAGTGTAC AATTCTATTATAAATGGTTTATGTAAGGATGGATTGGTGGATGTTGCAAGATCTTTGGTAGATGTATTACAGAGGATGGGTTTAGTTGACACCATAACTT ATAACACCCTGATAAATGGATATTTCAACTGTGGGAAGTTTGACAAGGCATTTAAGTTATCAACATTAATGCAAAATGCTGGAATTTTAGCAAGCAGTGC CACTTACAACACGGTGATCAAGTTTTTGTGTAAGTTTGGTTGTGTTCAAGAAGCAAAGGAACTGATGACGATGATGGTCCTATGGGGTGTGCTTCCCGAT AATATAACATATAGAACTCTTGTTATCAACATCAACAAGAATTGCAGTGCTGAAGAGGTAATTGAATTGCATGACTACATGGTGCTTAAGGGAGTTGTTC CTGATAAACTAACATATGAAAACATTGTTAGTCCACTTCTTCAAGAAGAAAGTGCAACCAGCTGA
AA sequence Show only first row Show all	>Potri.011G003700.1 pacid=42781256 polypeptide=Potri.011G003700.1.p locus=Potri.011G003700 ID=Potri.011G003700.1.v4.1 annot-version=v4.1 MLLSSFLIKRKCFLERSFHLGKSILNPISDDVVLRAICVNLKQRRWNFLEKNLASLTNALVSRVVCEFRNTPQLVLEFYNWVGEKKSVLHSLEISCSVIH VLVNSRRYDDALSLMGNLMTVNGLSPLEVLEALNNSYGICESNHAVFDALVRACTQIGATVGACEVIKKLQIEGCWVTIHAWNNFLSHLIKVNEIHRFWI VYKEMVSYGYMENVNTFNVVVHALCKDCKLQEALSVFYRILKSGIWPNVVTFNMMVDGACKMGDMDLALKLVRKMEIMSAGSIKPNSVTYNSLIDGFCKI GGITVAEELRNEMMKIDIEPNVRTYATMIEGYSRAGCLEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDVDGASLVFTDMSDKQIPLDKFTCSILTR GLCRNGYITTALKFLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARMYVRGLVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNLLVY NSIINGLCKDGLVDVARSLVDVLQRMGLVDTITYNTLINGYFNCGKFDKAFKLSTLMQNAGILASSATYNTVIKFLCKFGCVQEAKELMTMMVLWGVLPD NITYRTLVININKNCSAEEVIELHDYMVLKGVVPDKLTYENIVSPLLQEESATS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11710			Pentatricopeptide repeat (PPR)...		Potri.011G003700 [exp]	0	1
AT1G04570			Major facilitator superfamily ...		Potri.010G063800 [exp]	2.82	0.8690
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	4.24	0.8629
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050400 [exp]	6.24	0.8010
AT5G37530			NAD(P)-binding Rossmann-fold s...		Potri.004G083200 [exp]	6.70	0.8110
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	8.48	0.8430
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	9.79	0.8329
AT4G27130			Translation initiation factor ...		Potri.011G134700 [exp]	13.26	0.8117
AT5G23340			RNI-like superfamily protein (...		Potri.007G075600 [exp]	14.49	0.8320
AT2G39100			RING/U-box superfamily protein...		Potri.008G215200 [exp]	14.83	0.8108
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.012G134600 [exp]	15.19	0.8080	Pt-CDPK5.3

Compare expression of checked genes

Potri.011G003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.