Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38280 413 / 1e-135 PR5K PR5-like receptor kinase (.1) AT1G70250 384 / 6e-123 receptor serine/threonine kinase, putative (.1) AT4G18250 351 / 8e-110 receptor serine/threonine kinase, putative (.1) AT4G32300 320 / 2e-98 SD2-5 S-domain-2 5 (.1) AT5G24080 298 / 9e-94 Protein kinase superfamily protein (.1) AT2G19130 295 / 9e-89 S-locus lectin protein kinase family protein (.1) AT1G34300 292 / 9e-88 lectin protein kinase family protein (.1) AT4G00340 281 / 7e-84 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 264 / 6e-81 Protein kinase superfamily protein (.1) AT1G75800 240 / 2e-73 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014700 [exp] 1033 / 0 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.004G014512 [exp] 1023 / 0 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.004G014200 [exp] 780 / 0 AT5G38280 392 / 5e-128 PR5-like receptor kinase (.1) Potri.004G014250 [exp] 777 / 0 AT1G70250 364 / 5e-115 receptor serine/threonine kinase, putative (.1) Potri.011G004000 [exp] 619 / 0 AT4G32300 277 / 2e-82 S-domain-2 5 (.1) Potri.004G014450 [exp] 604 / 0 AT4G32300 316 / 9e-99 S-domain-2 5 (.1) Potri.004G014301 [exp] 565 / 0 AT4G32300 312 / 9e-98 S-domain-2 5 (.1) Potri.004G014636 [exp] 516 / 0 AT4G32300 300 / 3e-95 S-domain-2 5 (.1) Potri.004G061900 [exp] 389 / 5e-123 AT4G32300 402 / 3e-126 S-domain-2 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 317 / 5e-97 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 315 / 3e-96 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 301 / 3e-91 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10042266 [exp] 297 / 6e-90 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 295 / 5e-89 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 293 / 1e-88 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028711 [exp] 283 / 1e-86 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10006052 [exp] 284 / 1e-84 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10033032 [exp] 272 / 7e-84 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1) Lus10039315 [exp] 280 / 4e-83 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.011G003900.1 pacid=42781936 polypeptide=Potri.011G003900.1.p locus=Potri.011G003900 ID=Potri.011G003900.1.v4.1 annot-version=v4.1 ATGTCTCGGATAATATTATTTATGCATTTATCTTCTTTCTTGGTTGCTCATTTGTTCATATCAGGAGTTATTTCAACAACATTTACAATAACGAACAGTT GTAACCACACAGTTTGGCCAGGAGTTTCCTCCTCAAGTAGTGGTACTTTCCCCACAACTGGTTTTTCCCTTGAAAAGAATGAGTCAAAGATCATAAAAGC ACCAGCTTCTTGGAATGGTCGGTTCTGGGGCCGCACGTATTGCACCGAAGACTACTCAGGAAATTTCTCCTGCATTACTGGCGACTGTGGCTCCGGAAAA CTAGAATGTTCAGGCAACGGTGGTGCTTCTCCTGTAACGTTGGCAGAGTTTGCGCTGGGCAATTTCAATGGCCTTGACTTTTTTGATGTTAGTCTTGTTG ATGGCTTCAACCTGCCTTTGCTTGTTGTGCCTTCTGGTCAGAACTGTTCAAGCACAGGATGCATTGGCGATTTGAACGAATCATGTCCTACAGAGCTTGA GGTTACCAATGGTACAGAAGAGAAGAGTGTGGGATGCAGGAGCGCTTGCGATGCTCTTAAGTTGCCCATATATTGTTGTGATGGCGGAAGCATGTCAAGT GTTAAATGCAAGCCTTCATTGTATTCTCGATTTTTCAAGAATTCATGTCCACAGGGTTACAGCTATATTTATGATGATAATACTAACACTACCTACACCT GTCCATCCACCGATTACCAAATTACATTCTGCCCAGCAGGGAAGTCAATAAATACCACTTCATATAGATCCAGTTCAATAAATACTACTTCATATAGGCC CAATTCAAGAAACACAACAGCTACAGCAAACAACTATCGGCCATCATCAGGGGAGATAAAACCAATGCCTGAAATAAGGTCAAATGCTACTTCAAGAAGA CAATGGAAGCCAATTATAGCAGGAGTTGTAGGTGGCGTTCTTGCTATCATTTCTTTTGTAGTTATTATTGTTTTGAGGGTCAGGTGGAGCAAGTCCGAAA ATACTGAGGAGGATGTAGAAGATGATCATATACAGCAAGTTCCAGGAATGCCTGTGAGGTTTTCGTATAAAGATCTTTGTGATGCGACCGATGATTTCAA GGAAACACTTGGAAGAGGAGGCTTTGGTTCTGTGTTCAAAGGAGTACTCGCAGATGGAACAGGAATTGCGGTGAAGCGTCTGGATAATTTAGGCCAAGGA AAGAGGGAGTTTTTAGCGGAAGTTGAGACAATTGGAAGCGTGCACCATTTTAACTTGGTGAGGTTGATAGGATTTTGTGCAGAGAAATCATACAGGCTTC TAGTATACGAGTATATGAGTAATGGATCATTGGATAGTTGGATTTTTAAGAAAAGCCAAAGATCTTCCCTTGATTGGAAGACACGAAAGAAGATTATACT TGACATTGCAAAAGGGCTGGCTTATCTTCATGAAGAATGCCGACAGACCATAATCCACCTTGATATAAAACCGCAGAACATACTCTTAGATCCAAAGTTC AACGCCAAAATTTCTGACTTCGGATTATCTAAGCTGATTGATAGGGAGATGAGCAAAGTCCAACTTTCAATGAGAGGAACCCCTGGATATCTTGCTCCAG AATGGCACAAAGCATTAGGTCACGTTACAATAAAAGTTGACGTGTACAGCTTCGGAATTGTTCTACTGGAAGTAGTTTGTGCACGCAGAAACATTGATCA CTCGCAACCAGAATCTGCCTTCCATTTGCTTAGAATGTTGCAGAATAAAGCTGAAAACATTTTGGGATATTTAGATGAATATATGCAGAGTGATAAAGAG GAAATAATCAGGATGCTAAAAGTTGCTGCTTGGTGTTTGCAAGATGACCCAGAAAGAAGGCCTCTCATGTCAACAGTTGTAAAGGTGTTGGAGGGTGTAA TGGAGGTAGGTTCAAACCTGGTGTATAAGTTTTCACATGCACTGGCACCACCTCCTGCTGATGGCGCCCATATTTCTTCAGCACCGCCCCCAGCTTCTGT TCTTTCTAATCCTAGATGA
AA sequence Show only first row Show all	>Potri.011G003900.1 pacid=42781936 polypeptide=Potri.011G003900.1.p locus=Potri.011G003900 ID=Potri.011G003900.1.v4.1 annot-version=v4.1 MSRIILFMHLSSFLVAHLFISGVISTTFTITNSCNHTVWPGVSSSSSGTFPTTGFSLEKNESKIIKAPASWNGRFWGRTYCTEDYSGNFSCITGDCGSGK LECSGNGGASPVTLAEFALGNFNGLDFFDVSLVDGFNLPLLVVPSGQNCSSTGCIGDLNESCPTELEVTNGTEEKSVGCRSACDALKLPIYCCDGGSMSS VKCKPSLYSRFFKNSCPQGYSYIYDDNTNTTYTCPSTDYQITFCPAGKSINTTSYRSSSINTTSYRPNSRNTTATANNYRPSSGEIKPMPEIRSNATSRR QWKPIIAGVVGGVLAIISFVVIIVLRVRWSKSENTEEDVEDDHIQQVPGMPVRFSYKDLCDATDDFKETLGRGGFGSVFKGVLADGTGIAVKRLDNLGQG KREFLAEVETIGSVHHFNLVRLIGFCAEKSYRLLVYEYMSNGSLDSWIFKKSQRSSLDWKTRKKIILDIAKGLAYLHEECRQTIIHLDIKPQNILLDPKF NAKISDFGLSKLIDREMSKVQLSMRGTPGYLAPEWHKALGHVTIKVDVYSFGIVLLEVVCARRNIDHSQPESAFHLLRMLQNKAENILGYLDEYMQSDKE EIIRMLKVAAWCLQDDPERRPLMSTVVKVLEGVMEVGSNLVYKFSHALAPPPADGAHISSAPPPASVLSNPR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.011G003900 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G165300 [exp]	3.31	0.9144
AT1G23000			Heavy metal transport/detoxifi...		Potri.008G128400 [exp]	15.87	0.8693
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001400 [exp]	16.18	0.9131
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Potri.007G091000 [exp]	19.05	0.8957
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117100 [exp]	20.19	0.9117
AT2G32390		GLR6, ATGLR3.5	glutamate receptor 3.5 (.1.2....		Potri.014G152400 [exp]	28.10	0.9021
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G267700 [exp]	28.28	0.8901
AT1G29730			Leucine-rich repeat transmembr...		Potri.010G155000 [exp]	28.61	0.8840
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Potri.015G147300 [exp]	30.26	0.9077
					Potri.004G088400 [exp]	31.93	0.8964

Compare expression of checked genes

Potri.011G003900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.