Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 278 / 8e-83 SD2-5 S-domain-2 5 (.1) AT5G24080 243 / 1e-72 Protein kinase superfamily protein (.1) AT2G19130 237 / 9e-68 S-locus lectin protein kinase family protein (.1) AT1G34300 236 / 3e-67 lectin protein kinase family protein (.1) AT4G00340 227 / 3e-64 RLK4 receptor-like protein kinase 4 (.1) AT5G18500 216 / 2e-62 Protein kinase superfamily protein (.1.2) AT5G20050 212 / 2e-61 Protein kinase superfamily protein (.1) AT3G17420 209 / 2e-60 GPK1 glyoxysomal protein kinase 1 (.1) AT5G65240 211 / 7e-60 Leucine-rich repeat protein kinase family protein (.1.2) AT1G09440 208 / 8e-60 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014450 [exp] 491 / 5e-168 AT4G32300 316 / 9e-99 S-domain-2 5 (.1) Potri.004G014700 [exp] 486 / 4e-164 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.004G014512 [exp] 485 / 6e-164 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.004G014301 [exp] 473 / 3e-161 AT4G32300 312 / 9e-98 S-domain-2 5 (.1) Potri.004G014200 [exp] 470 / 5e-158 AT5G38280 392 / 5e-128 PR5-like receptor kinase (.1) Potri.004G014250 [exp] 470 / 2e-157 AT1G70250 364 / 5e-115 receptor serine/threonine kinase, putative (.1) Potri.011G003900 [exp] 465 / 7e-156 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.004G014636 [exp] 444 / 2e-152 AT4G32300 300 / 3e-95 S-domain-2 5 (.1) Potri.004G061900 [exp] 332 / 2e-101 AT4G32300 402 / 3e-126 S-domain-2 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 262 / 2e-76 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 259 / 7e-76 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 258 / 3e-75 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10039315 [exp] 243 / 2e-69 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10028711 [exp] 234 / 4e-68 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10033748 [exp] 231 / 2e-65 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 231 / 3e-65 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10042266 [exp] 229 / 1e-64 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 226 / 1e-63 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020747 [exp] 213 / 4e-61 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.011G004000.1 pacid=42781913 polypeptide=Potri.011G004000.1.p locus=Potri.011G004000 ID=Potri.011G004000.1.v4.1 annot-version=v4.1 ATGGATCTAATCTGTTTCTTCATTGCTCATTTATTCATATCAGGTGTTGTTTCAACAACTTTTTCAGTAACAAACAAGTGCAACTACACGATATGGCCAG GGTTTCTGGCAAATGAAGATGATCCTCCTGCATCTATCTCTAGCTTCTCCCTTCAAAGGGGACAGTCAAAAACCATATCAGCACCAGTTTCCTGGGGTTA TCCTTTCTGGGGCCATACATATTGCACTGAAGAATCCACAGGAAATTTCTCCTGCATCACAGGTGATTGTGGTTCTGGCAAACTAGAATGTTCAGGAAAC GGCACGGCTACTTCTGCCATATTGCCAGAGTTCAAGCTTGTTGGTTCTGGATGCGTGGCGGATTCGAACGTAGTATATTCTTCAGAGCTCAAGGTTAATA GTTCCGGTGGGGAGATCGATGCGTGCAAGTGTGTGTGCAAAGCATTTGGATCACCACACTATTGTGCATCAGTCAATTACCAAATTATTTTCTGCGCAGC AAAAACTACTACTACAAGAAGACGTTCGGCATCCGAGTCCACCACAACCTCCACAACAGTTTCAGCAAATGCTACTGCAAATGGCGCTGATTCGACGTCC GAGTCCATCGCAACCAGCCCCACATCTTCAGTGAAAGCTTCTGCAAAAGGCTCCAATTCATCGAGCAGTGCAAAAGTAACTACAACTAGCGTAACGGTGA AAAATCTAAGCCCCATGACATTCCCTCCAAGCCCTTTGCCAGATGAGAAAACACCAAGCCCTATGCCATTCCCTCCAAGCCCTTTGCCAAGCCCTTTGCC AGATGAGAAAACACCAAGCCCTTTGCCAGATGAGAAAACACCAAGCCCTTTGCCAAAAACAAGGCCTAATACTACTTCAAGAAGACGCTTGGCACCGATT ATAGCAGGAGTAATAGGTGGTGCTCTTCTCATCATTTTCCTCATAGTGATTCTTATTTTGAGGGCGAGGTGGTGGGAGGAATCTGAGAAAAATGAGGATT TGGAAGCTGATGATATAAGGCAAGTTCCAGGAACGCCTGTGAGGTTTTCATATGAAGATCTTCGTGTTGCAACTCATGATTTCAGTGATACACTTGGAAA AGGAGGTTCCGGATCTGTGTTCAAAGGAGTACTGCTAGATGGGACTCATGTTGCTGTGAAGAAGTTGGACAAATTAGGCCAAGATATGAGTTCATTTCTA GCAGAAGTTGAGGCAATTGGAAGCATCAACCATTTTAATTTGGTACGATTGATAGGATTTTGTGCAGAGAAATCATCTGGGCTTTTGGTTTTCGAGTATA TGAACAAAGGATCCCTGGATAAATGGATTTTCAAGAATGACCAAGGATCTTGCCTCGATTGGCAGACCCGAAATAAGGTTGTCCTTGGCATAGCAAAAGG TCTGGCTTATCTTCATGAAGACTGCCAGAAGAAAATAATACATTTCGATATAAAACCGCTGAACATTCTCTTGGATGCAAATTTCAATGCCAAGATTTGT GATTTTGGGTTATCTGAGCTAGTTGATAGAGATACGAGCCAAGTTCAAACTCGAACCAGAGGAACCTGTGGATATATTGCTCCAGAATGTTATAAAACAC CACCAGGTCGTATCACAGTAAAAGTTGACGTATACAGTTTCGGAATTGTTCTCCTGGAAATAGTTTGTGCACGCAGAAATTTGGATCACACACAACCAGA ATCTGAAAATCATTTGCTTAGGATGTTACAGAAGAAAGCTGAACAAGATAGGCTCATAGACATTGTGGAGAATTTGGATGATCAGTACATGCAGAGTGAT AGAGAGGAAATAATCAGGATGATAAAGATTGCTGCTTGGTGTTTGCAAGATGACCCAGAAAGAAGGCCTCTCATGTCAGCAGTTGTGAAGGTGTTGGAGG GTGTAATGGAGGTAGAATCAAACCTCGTTTATAAGTTTCATCATGCATTGATAACTCCTGCTGTTAATCACCATACATCTCCACAGCCACAAGCATCTGT TCTTTCTTATCCCAGATGA
AA sequence Show only first row Show all	>Potri.011G004000.1 pacid=42781913 polypeptide=Potri.011G004000.1.p locus=Potri.011G004000 ID=Potri.011G004000.1.v4.1 annot-version=v4.1 MDLICFFIAHLFISGVVSTTFSVTNKCNYTIWPGFLANEDDPPASISSFSLQRGQSKTISAPVSWGYPFWGHTYCTEESTGNFSCITGDCGSGKLECSGN GTATSAILPEFKLVGSGCVADSNVVYSSELKVNSSGGEIDACKCVCKAFGSPHYCASVNYQIIFCAAKTTTTRRRSASESTTTSTTVSANATANGADSTS ESIATSPTSSVKASAKGSNSSSSAKVTTTSVTVKNLSPMTFPPSPLPDEKTPSPMPFPPSPLPSPLPDEKTPSPLPDEKTPSPLPKTRPNTTSRRRLAPI IAGVIGGALLIIFLIVILILRARWWEESEKNEDLEADDIRQVPGTPVRFSYEDLRVATHDFSDTLGKGGSGSVFKGVLLDGTHVAVKKLDKLGQDMSSFL AEVEAIGSINHFNLVRLIGFCAEKSSGLLVFEYMNKGSLDKWIFKNDQGSCLDWQTRNKVVLGIAKGLAYLHEDCQKKIIHFDIKPLNILLDANFNAKIC DFGLSELVDRDTSQVQTRTRGTCGYIAPECYKTPPGRITVKVDVYSFGIVLLEIVCARRNLDHTQPESENHLLRMLQKKAEQDRLIDIVENLDDQYMQSD REEIIRMIKIAAWCLQDDPERRPLMSAVVKVLEGVMEVESNLVYKFHHALITPAVNHHTSPQPQASVLSYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.011G004000 [exp]	0	1
AT5G16740			Transmembrane amino acid trans...		Potri.002G233200 [exp]	1.41	0.8779
AT5G16740			Transmembrane amino acid trans...		Potri.002G233100 [exp]	2.44	0.8646
AT4G03170	B3		AP2/B3-like transcriptional fa...		Potri.001G397100 [exp]	6.63	0.8601
AT1G47670			Transmembrane amino acid trans...		Potri.002G012900 [exp]	10.86	0.8651	PTRLHT10
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G029700 [exp]	11.22	0.8202
					Potri.016G011250 [exp]	11.95	0.8203
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037632 [exp]	12.64	0.8126
					Potri.001G387000 [exp]	16.97	0.8052
					Potri.014G115800 [exp]	17.88	0.8456
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107400 [exp]	20.49	0.8322

Compare expression of checked genes

Potri.011G004000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.