Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) AT4G21970 121 / 4e-35 Protein of unknown function, DUF584 (.1) AT3G45210 86 / 1e-21 Protein of unknown function, DUF584 (.1) AT2G28400 76 / 2e-17 Protein of unknown function, DUF584 (.1) AT4G26950 74 / 9e-17 Protein of unknown function, DUF584 (.1.2) AT5G03230 71 / 2e-15 Protein of unknown function, DUF584 (.1) AT1G29640 69 / 4e-15 Protein of unknown function, DUF584 (.1) AT1G11700 70 / 7e-15 Protein of unknown function, DUF584 (.1) AT5G60680 69 / 7e-15 Protein of unknown function, DUF584 (.1) AT3G15040 70 / 2e-14 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014000 [exp] 223 / 1e-74 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 92 / 1e-23 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 92 / 2e-23 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 91 / 2e-22 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 84 / 3e-20 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 77 / 5e-18 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 71 / 1e-15 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 67 / 2e-13 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 64 / 2e-13 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020043 [exp] 140 / 3e-42 AT4G21970 127 / 1e-37 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 140 / 4e-42 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1) Lus10021536 [exp] 99 / 4e-26 AT4G21970 102 / 1e-27 Protein of unknown function, DUF584 (.1) Lus10040067 [exp] 97 / 7e-25 AT4G21970 98 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 81 / 3e-20 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 82 / 6e-20 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 83 / 7e-20 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 83 / 1e-19 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 80 / 9e-19 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 79 / 2e-18 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [poplar] [flax] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Potri.011G004100.3 pacid=42781221 polypeptide=Potri.011G004100.3.p locus=Potri.011G004100 ID=Potri.011G004100.3.v4.1 annot-version=v4.1 ATGCTTATGGCAGATTGGTGTGGTGTCATGGGCAAGGGAAGTGGTAGAGTTGGTGGCTATGGTACTAGGAGATCAATGAGAGATGAAGATTTTGAAGAAG AAGAAGTTTGGTCAGTCATGAAGGAGATTGGAGATTCAAGTTCTAACTCCAAGTACCCCTCTTCAGGTTCTTCTTCTTCTTCTTCTTCTTCTGCATGGCA TATCCCTACTGCTGCTCCAAGAACGATTCCATCAACAAAGCCAACTCCAACAAACCATGGAGGCAAAGTAGTTCAACAACAGTCATCAGCTCCTGTGAAC ATCCCTGATTGGTCAAAAATTTACGGGAAAAACTCAAGGAATATGGGCTCATGGGCTGATCATAACGGTATTGCATATGATGATGGAGATTATCATGTCA ATGATGATGAGGGTGGTGATGATGACATAGTGCCTCCACATGAGTGGTTAGCTAGGAAGCTTGCAAGGAGTCAAATCTCTTCCTTCTCTGTGTGTGAAGG GATTGGAAGGACACTCAAAGGGAGAGATCTCAGTAAAGTAAGGAACGCTATTTTGACAAAAACTGGCTTTCTAGAATAG
AA sequence Show only first row Show all	>Potri.011G004100.3 pacid=42781221 polypeptide=Potri.011G004100.3.p locus=Potri.011G004100 ID=Potri.011G004100.3.v4.1 annot-version=v4.1 MLMADWCGVMGKGSGRVGGYGTRRSMRDEDFEEEEVWSVMKEIGDSSSNSKYPSSGSSSSSSSSAWHIPTAAPRTIPSTKPTPTNHGGKVVQQQSSAPVN IPDWSKIYGKNSRNMGSWADHNGIAYDDGDYHVNDDEGGDDDIVPPHEWLARKLARSQISSFSVCEGIGRTLKGRDLSKVRNAILTKTGFLE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04630			Protein of unknown function, D...		Potri.011G004100 [exp]	0	1
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.010G246800 [exp]	8.12	0.8654
AT4G12690			Plant protein of unknown funct...		Potri.015G084500 [exp]	8.94	0.8471
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Potri.005G253800 [exp]	16.12	0.8606	Pt-GLR3.4
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Potri.010G102900 [exp]	17.43	0.7967	CRE1.1
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.001G252400 [exp]	18.16	0.8446
AT2G26975			Ctr copper transporter family ...		Potri.009G038700 [exp]	18.33	0.8281	Pt-COPT2.1
AT3G50780			unknown protein		Potri.005G129700 [exp]	19.59	0.8430
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.014G177200 [exp]	25.63	0.8482
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128300 [exp]	33.15	0.8429
AT3G48540			Cytidine/deoxycytidylate deami...		Potri.012G097800 [exp]	34.85	0.7940

Compare expression of checked genes

Potri.011G004100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.