Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 520 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 501 / 9e-178 Galactosyltransferase family protein (.1) AT4G26940 489 / 2e-173 Galactosyltransferase family protein (.1.2) AT1G11730 485 / 4e-172 Galactosyltransferase family protein (.1) AT1G32930 464 / 2e-163 Galactosyltransferase family protein (.1) AT1G77810 441 / 7e-155 Galactosyltransferase family protein (.1.2) AT1G33430 432 / 8e-151 Galactosyltransferase family protein (.1.2) AT1G22015 426 / 9e-149 DD46 Galactosyltransferase family protein (.1) AT5G53340 237 / 2e-75 Galactosyltransferase family protein (.1.2) AT4G32120 227 / 2e-71 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G013900 [exp] 679 / 0 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 526 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 504 / 2e-179 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 475 / 1e-167 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G151400 [exp] 454 / 1e-159 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 452 / 8e-159 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 447 / 5e-157 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.019G067300 [exp] 428 / 8e-149 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 256 / 1e-82 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040062 [exp] 520 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006782 [exp] 516 / 0 AT1G05170 512 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 511 / 0 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 487 / 1e-172 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 482 / 2e-170 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 480 / 3e-169 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 474 / 2e-167 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 472 / 1e-166 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 467 / 1e-164 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10001148 [exp] 461 / 2e-162 AT1G05170 458 / 4e-161 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase CL0110 [poplar] [flax] PF13334 [poplar] [flax] DUF4094 Domain of unknown function (DUF4094)
Representative CDS sequence Show only first row Show all	>Potri.011G004200.2 pacid=42781640 polypeptide=Potri.011G004200.2.p locus=Potri.011G004200 ID=Potri.011G004200.2.v4.1 annot-version=v4.1 ATGTCAGTGAAGGGTAGAGGAGGAGTTGGAGTAGGAGAGATGGGTTCAAGGAATGTAGTAGTGTCAAGGAATTTGGCACTTTTGCTTTGTTTTAGTAGCT TCTTTGCTGGGATATTGTTCACTAACAGGATACGGACAGAGCCTGAAAGAACAAATTTAGAATCTGAGGCTTGTGATCAGAAGCTTAAGGTTGGAAATCA TATATCCAATTACAGTCTAGGGCAAATTTCAAGTACTCAGAATGATATCAGTACACTCAATAGTAAAATTTCAAGTATAGAGATGAAATTAGCAGCTGCC AAGGCAGAGCAGCAATCTTTGTCGAGTGCTGATGCTGCATCAGGAAACTTGAAAAGAAAATACTTTATGGTAATTGGAATCAATACAGCTTTTAGCAGTC GGAAGCGGAGGGATTCAATCCGTGCAACTTGGATGCCACAAGGTGAGGAAAGGAAGAAGTTGGAGGAGAAGGGTATAGTCATACGCTTTGTTATAGGTCA CAGTTCAACAGCTGGTGGCATTCTGGACAAAGCTATTGAAGCAGAGGAAATGATGCATGGAGATTTCTTGAGGCTGGAACATGTTGAGGGCTACCTAGAA TTATCGGCCAAGACAAAGACGTACTTTAGAACTGCTGTTGCTTTGTGGGATGCCGACTTCTATATCAAAGTTGACGATGATGTTCATGTGAATTTAGCAA CGCTTGGCACAATCTTAGCTGGACACAAAAAGAAACCTCGGGTTTATGTTGGCTGTATGAAGTCTGGTCCTGTGCTTTCTAAAAAGGGTGTGAGATATTA CGAACCAGAGTATTGGAAATTTGGAGAAGCTGGAAACAAGTATTTCCGACACGCTACTGGACAACTTTATGCTATATCAAAGGATCTGGCAACCTATATA TCAGTAAACCAGCACATCTTGCATAAATATGTCAATGAAGATGTTTCTCTGGGATCTTGGTTTATTGGCCTAGATGTGGAGCATGTTGATGATAAGAGAC TTTGTTGTGGCACCCCACCAGATTGTGAGTGGAAGGCTCATCTAGGCAGCACTTGTGCTGTTTCGTTTGATTGGAAATGTAGCGGGATTTGCAGGTCTGT TGAAAGAATGATGGAAGTTCACAAGACTTGTGGTGAAGATGTGAATGCACTAGAGCACGCAAGCTTCTAA
AA sequence Show only first row Show all	>Potri.011G004200.2 pacid=42781640 polypeptide=Potri.011G004200.2.p locus=Potri.011G004200 ID=Potri.011G004200.2.v4.1 annot-version=v4.1 MSVKGRGGVGVGEMGSRNVVVSRNLALLLCFSSFFAGILFTNRIRTEPERTNLESEACDQKLKVGNHISNYSLGQISSTQNDISTLNSKISSIEMKLAAA KAEQQSLSSADAASGNLKRKYFMVIGINTAFSSRKRRDSIRATWMPQGEERKKLEEKGIVIRFVIGHSSTAGGILDKAIEAEEMMHGDFLRLEHVEGYLE LSAKTKTYFRTAVALWDADFYIKVDDDVHVNLATLGTILAGHKKKPRVYVGCMKSGPVLSKKGVRYYEPEYWKFGEAGNKYFRHATGQLYAISKDLATYI SVNQHILHKYVNEDVSLGSWFIGLDVEHVDDKRLCCGTPPDCEWKAHLGSTCAVSFDWKCSGICRSVERMMEVHKTCGEDVNALEHASF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05170			Galactosyltransferase family p...		Potri.011G004200 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Potri.013G039000 [exp]	3.16	0.8125
AT4G23740			Leucine-rich repeat protein ki...		Potri.001G095200 [exp]	18.38	0.8122
AT1G38131			O-fucosyltransferase family pr...		Potri.005G173500 [exp]	19.44	0.7579
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	22.69	0.7756
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	28.24	0.7679	Pt-ATMSI4.2,NFC907
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	31.30	0.7656
AT3G14172			unknown protein		Potri.019G064000 [exp]	59.92	0.7233
AT3G07210			unknown protein		Potri.002G245700 [exp]	67.54	0.7482
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.008G088300 [exp]	68.27	0.7357	PtEXPA4,EXPA1.2
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.006G071500 [exp]	68.49	0.7198

Compare expression of checked genes

Potri.011G004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.