Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49610 65 / 2e-11 F-box family protein (.1) AT4G22430 58 / 7e-09 F-box family protein (.1) AT1G47300 51 / 6e-07 F-box family protein (.1) AT5G65850 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT1G15680 45 / 6e-05 F-box family protein (.1) AT1G46912 44 / 0.0001 F-box associated ubiquitination effector family protein (.1.2) AT1G60370 44 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT2G16810 42 / 0.0004 F-box and associated interaction domains-containing protein (.1) AT2G19630 41 / 0.0008 F-box and associated interaction domains-containing protein (.1.2) AT1G33020 42 / 0.0009 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000700 [exp] 210 / 7e-63 AT3G15910 58 / 5e-09 unknown protein Potri.009G132400 [exp] 172 / 3e-49 ND / Potri.005G043500 [exp] 72 / 2e-13 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.010G149000 [exp] 62 / 2e-10 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.003G215900 [exp] 61 / 8e-10 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.001G224200 [exp] 59 / 2e-09 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.010G254000 [exp] 59 / 3e-09 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.011G137200 [exp] 59 / 4e-09 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.013G067800 [exp] 58 / 5e-09 AT5G07610 131 / 4e-34 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013987 [exp] 132 / 6e-33 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10003349 [exp] 126 / 5e-31 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10007302 [exp] 119 / 3e-29 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10013986 [exp] 117 / 5e-28 ND 55 / 7e-08 Lus10028682 [exp] 112 / 6e-27 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10002769 [exp] 103 / 6e-25 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10016522 [exp] 104 / 1e-23 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10040838 [exp] 103 / 1e-23 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10035796 [exp] 102 / 3e-23 ND 45 / 1e-04 Lus10000860 [exp] 92 / 4e-20 AT5G49610 52 / 3e-07 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.011G004800.2 pacid=42782157 polypeptide=Potri.011G004800.2.p locus=Potri.011G004800 ID=Potri.011G004800.2.v4.1 annot-version=v4.1 ATGGCCGGTGATGATGAGAAGCCAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGAGCGAACACTTGTGTCATGCTGCTCCAACAAAAGAACAAGGAGAG ATATCCCATCTTCATCAGAACAGTCCCGTTTATCTCTTAATGATCTGCAACCTCTCTTGATTGAAATTCTTCATAGGCTACCCTCCACTCAATCTGCGTT TCTGTGCAAGTGTGTATGCAAAAAATGGTATTCTCTAATATCTTCTCCTTATTTTGCTGGTCGATTTATAACCCACCATCTAAATCTTCATTACAAGCAA AACCCTTCTGCTCTTCTCATCAGTTACTGGAGTAAACCCAGTTGGAATGTCCTGTTCACATTTTCGGATGAACCCATGTTCAAATTTCGTGGATTTGAGC TCAGCTATCTCCCTGAAAGAAATGGGTGTGTTAGGGTCTCAGCTATCGTCAATGACTTAATGTTATGCTGTGTAGCTAAGATTGAAATTGGAATGTTGCA ATATTATATCTGCAATCCATTTACAATGCAATGGATTGCCCTCCCTTTGCTTGAAGCTGATTACATGAATGATTACAAGGTGGGATTTGTTTGTGAACCT TACTATTTTGAAGATAGTCAAGGAGAAAGTTTTATTAATAGCAAATATCGATTTAGGGTAGTTCATTTCACTAGAGTAGAATCTACGCAAATAGTTATGA AGACATATTGTTCAGAGACTAAAAAATGGTATAGGTCAGTTCTCGAAGGTTCCGAATTTTGGTGGATTACTGATGTTGTTGCACACAATGGGAAGTTGGT TTGGTGCAATCGTGAGCATATTTTTGCTTATGATCCCTTCAATCCAGAGCTATTCACTTCCATCAATTGCTCTTATATGCAAACCAGGTTGTTGCCCGCA ATGGGAAAATGCTTTGGGGTGCGTCAGGGCTTTCTATGTTTGATGGAATTGGTAGGTGTGGGCATTGATCGGACTTTTCATATTTGGAAACTCAAGGATT ATAATAACGGGGAATGGAGCTTGGAGGACCATGTTTCTCTCAATGCAATGATCCCTGAAAGTTCCTTGGTCCAGGAAATCGTTGATGGTAGCGAGAACAA GTTAAAACCGCTGGGTTTCCATCCAAGTGATGGGAATATTGTCTACTTGCACTTCCAAACTTATGTCATCTCATTCAACACGCGGACAAAAGAGTTGAAA ATGGCTGGTAAGATTCCAGGTGTGAGAGATTCCTTTTGTCACGGAAAGGTCTTCCATGTTGAACTCCCATTGTGGCCTACGCCAATTGCGAAACCAATTG AAATCCTTCCATGCTATTGA
AA sequence Show only first row Show all	>Potri.011G004800.2 pacid=42782157 polypeptide=Potri.011G004800.2.p locus=Potri.011G004800 ID=Potri.011G004800.2.v4.1 annot-version=v4.1 MAGDDEKPSRSRSRSRSRERTLVSCCSNKRTRRDIPSSSEQSRLSLNDLQPLLIEILHRLPSTQSAFLCKCVCKKWYSLISSPYFAGRFITHHLNLHYKQ NPSALLISYWSKPSWNVLFTFSDEPMFKFRGFELSYLPERNGCVRVSAIVNDLMLCCVAKIEIGMLQYYICNPFTMQWIALPLLEADYMNDYKVGFVCEP YYFEDSQGESFINSKYRFRVVHFTRVESTQIVMKTYCSETKKWYRSVLEGSEFWWITDVVAHNGKLVWCNREHIFAYDPFNPELFTSINCSYMQTRLLPA MGKCFGVRQGFLCLMELVGVGIDRTFHIWKLKDYNNGEWSLEDHVSLNAMIPESSLVQEIVDGSENKLKPLGFHPSDGNIVYLHFQTYVISFNTRTKELK MAGKIPGVRDSFCHGKVFHVELPLWPTPIAKPIEILPCY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49610			F-box family protein (.1)		Potri.011G004800 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121876 [exp]	6.63	0.7549
AT4G38980			unknown protein		Potri.009G124000 [exp]	10.19	0.6940
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.005G012400 [exp]	10.95	0.6912
AT5G61450			P-loop containing nucleoside t...		Potri.001G125700 [exp]	16.06	0.7300
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.001G390200 [exp]	16.12	0.6264
AT1G20460			unknown protein		Potri.005G248300 [exp]	16.43	0.6426
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Potri.007G023100 [exp]	17.54	0.6014
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121851 [exp]	21.28	0.7169
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Potri.009G158200 [exp]	22.75	0.6454
AT2G05755			Nodulin MtN21 /EamA-like trans...		Potri.014G157700 [exp]	25.57	0.6906

Compare expression of checked genes

Potri.011G004800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.