Plant FIBer expression Database

Potri.011G005000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G04210 358 / 3e-125 PUX4 plant UBX domain containing protein 4 (.1)
AT4G22150 347 / 5e-120 PUX3 plant UBX domain-containing protein 3 (.1)
AT4G15410 272 / 6e-90 PUX5, ATB' GAMMA, ATB'GAMMA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
AT3G21660 149 / 2e-42 UBX domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G011300
[exp]
495 / 1e-179 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1)
Potri.006G270300
[exp]
495 / 1e-179 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1)
Potri.004G004200
[exp]
445 / 7e-160 AT4G22150 404 / 2e-141 plant UBX domain-containing protein 3 (.1)
Potri.002G225800
[exp]
308 / 4e-104 AT4G15410 362 / 2e-122 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
Potri.014G157200
[exp]
290 / 3e-97 AT4G04210 329 / 1e-111 plant UBX domain containing protein 4 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030005
[exp]
298 / 8e-100 AT4G15410 407 / 6e-140 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
Lus10035318
[exp]
296 / 1e-98 AT4G15410 414 / 3e-142 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
Lus10031535
[exp]
280 / 5e-93 AT4G15410 353 / 2e-119 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
Lus10015145
[exp]
0 / 1 AT4G15410 184 / 1e-81 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF00789 UBX UBX domain
CL0072 PF08059 SEP SEP domain
Representative CDS sequence
>Potri.011G005000.1 pacid=42780591 polypeptide=Potri.011G005000.1.p locus=Potri.011G005000 ID=Potri.011G005000.1.v4.1 annot-version=v4.1
ATGCTTGTCCAAGATCCTACAAAGGGTAATGACGTGGATGCAATTTTCAATCAAGCTAGACAGCTTGGTGCTGTTGAAGGGCCTTTGGAGAATATTAATC
AATCTTCAAGCTCAAGTAGCTTTAGTGGAACTGGTAGATTACTCTCAGGGGAGACTGTACCATCTGCTCCTCAACAACCTGAAGCTGTTGTTCACAATAT
TGTTTTCTGGACGAATGGTTTCACTGTAAATGATGGCCCTTTGAGGAGTCTGGATGATCCTGAAAATGCATCTTTCATAGAGAGCATCAGGAAGTCCGAG
TGTCCGAAGGAGCTTGAACCAGCGGATAGAAGGTCCTCAGTTCATGTCAATTTGATTAGGAAGGATCAAAAGTGCCCAGAACCAGAGAGGCAGCGCCATG
TTCCATTCCAAGGTGTAGGGAGAACTCTAGGAAGCAGCAGTACTGCACTTGCAACTGAACCAACAGCTGATTCTGCTCCTCTGAACTCTGCTCCAACCCC
TTTTATGGGCCTGGTTGTGGATGAAACACTGCCATCGACTTCAATTCAGCTTAGGCTGGCTGATGGGACCCGCATGGTGACCCACTTTAATAATCATCAC
ACAGTCAATGACATTCGATCCTTCATAGATGCTTCCAGGCCTGGGGCTGCTCTTAATTATCAACTGCAGTTGATGGGGTTCCCACCTAAGCTTCTTACTG
ATCCAACACAGACAATAGAGCAGGCAGGCCTTGCCAATTCAGTTGTTATTCAGAAATTCTAG
AA sequence
>Potri.011G005000.1 pacid=42780591 polypeptide=Potri.011G005000.1.p locus=Potri.011G005000 ID=Potri.011G005000.1.v4.1 annot-version=v4.1
MLVQDPTKGNDVDAIFNQARQLGAVEGPLENINQSSSSSSFSGTGRLLSGETVPSAPQQPEAVVHNIVFWTNGFTVNDGPLRSLDDPENASFIESIRKSE
CPKELEPADRRSSVHVNLIRKDQKCPEPERQRHVPFQGVGRTLGSSSTALATEPTADSAPLNSAPTPFMGLVVDETLPSTSIQLRLADGTRMVTHFNNHH
TVNDIRSFIDASRPGAALNYQLQLMGFPPKLLTDPTQTIEQAGLANSVVIQKF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G04210 PUX4 plant UBX domain containing pr... Potri.011G005000
[exp]
0 1
AT1G05620 NSH2, URH2 nucleoside hydrolase 2, uridin... Potri.007G144600
[exp]
1.00 0.8813
AT1G31130 unknown protein Potri.015G125600
[exp]
1.73 0.8500
AT2G35100 ARAD1 ARABINAN DEFICIENT 1, Exostosi... Potri.012G124600
[exp]
2.23 0.8425
AT1G07950 MED22B Surfeit locus protein 5 subuni... Potri.008G080700
[exp]
4.24 0.8216
AT5G11280 unknown protein Potri.006G251600
[exp]
5.47 0.8296
AT3G07550 RNI-like superfamily protein (... Potri.017G056400
[exp]
6.32 0.8111
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.019G111200
[exp]
7.07 0.8216 Pt-ATHM1.3
AT1G03030 P-loop containing nucleoside t... Potri.005G218700
[exp]
10.00 0.8649
AT5G51400 PLAC8 family protein (.1) Potri.003G108800
[exp]
10.67 0.7880
AT3G13898 unknown protein Potri.003G042300
[exp]
11.61 0.7898

Potri.011G005000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.