Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) AT1G21150 189 / 5e-56 Mitochondrial transcription termination factor family protein (.1) AT1G61980 159 / 1e-44 Mitochondrial transcription termination factor family protein (.1) AT1G62120 156 / 3e-43 Mitochondrial transcription termination factor family protein (.1) AT1G61970 154 / 1e-42 Mitochondrial transcription termination factor family protein (.1.2) AT1G62110 146 / 2e-39 Mitochondrial transcription termination factor family protein (.1) AT3G46950 145 / 5e-39 Mitochondrial transcription termination factor family protein (.1) AT1G61960 138 / 1e-36 Mitochondrial transcription termination factor family protein (.1) AT1G61990 136 / 5e-36 Mitochondrial transcription termination factor family protein (.1) AT1G62085 129 / 3e-33 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G012400 [exp] 603 / 0 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 594 / 0 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 586 / 0 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 573 / 0 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 447 / 7e-157 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.008G216200 [exp] 358 / 4e-122 AT5G07900 217 / 8e-67 Mitochondrial transcription termination factor family protein (.1) Potri.012G046700 [exp] 276 / 7e-90 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 274 / 5e-89 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 271 / 4e-88 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040820 [exp] 234 / 2e-73 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 234 / 2e-73 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 217 / 5e-67 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 211 / 6e-65 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 197 / 3e-59 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 162 / 5e-46 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 157 / 2e-45 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 151 / 7e-43 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 134 / 3e-36 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 124 / 1e-31 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.011G005100.1 pacid=42780803 polypeptide=Potri.011G005100.1.p locus=Potri.011G005100 ID=Potri.011G005100.1.v4.1 annot-version=v4.1 ATGTTTAGGTTTCTCTGCAAAAGCTTGGGGTTAGGATGCTCCATTAGACCTAGTTCATCAGTTCATCAAGAATTACACTATTTTCTTGAAAACCCTTCAA TATTATCATGCCTCAGAAACATTTCATCTGTGAATTCAGATGATGTAAAAGAACACTCCTTTACAGTATCATACCTTATGAACATTTGTGGGTTCTCTCT AAAACCTGCTTTAGAAGTTTCTAAACAGGTTCATTTTGAAACCCCAGGTAATGCTGATTCTGTTCTTGAGATTTTCAAGAACCATGGCTTCTCAAAGGCC CATATTTTGAACCTTGTGAGGAGATGGCCTAGAGTGCTTTTGTGTAAACCTCACAGAACACTCTTGCCCAAGCTTGGATTTTTCCATTCTAAAGGGTTTT CAAGCCCTGATGTTGTCAAAATTATATCAACCTATCCGTGGATTTTGAGAATTAGCTTTGAAAACAAGTTAGTCCCTGCTTTTGATTTCTTTGAAAATTT GCTCCAATCTGATGCCATGGCTATCAAAGCAGTCAAACTTGACCCGCGCCTTCTAGATGCTGGTCTTGAAAAGGCCGCACGTATTGTTGATATTTTGTTA GAAAATGGAGTCCCTATGAAGAATATTGCTCTATCAGTTCGGATAAAGCCTGGTATTATGCTTTCGAATCTGGAGAATTTCAAAAGGCTTGTTCAGAAAG CAAGTCTAATGGGATTTCATCCTTCCAAGAGTCAATTTGTTGTAGCAATTGTGTTGCTGAGGTCCATGACCACATCCACATGGGAAAAAAAGCTTGATGT GTATAGGAGATGGGGTTTGTCTCAAGAAGAAATTCTTGCAGCATTTGTAAAGAATCCTTGGTTTATGAGCTTATCTGAAGAGAAGATCACGGCAGTGATG GATCTTTTTGTCAACCAATTGGGTTGGGAGTCTTCCTATCTTGCCAAAAACCCAACTATACCATCATATAGCCTGGACAAAAGGCTTGTTCCAAGGGCTT TGTTATTGCAATTTCTAGTTTCTAAAGGCTTGGTTGAGAAGAGTTTCAGAAGCACTGCGTTCTTCTACACACCTGAAAATAAGTTCCGGCAGATGTTCAT AAATCACCGTTCTGAATCTACCCAGATATTGAAATTTTACAATGAAAAACTGAATCTTTCATCAGTTGTAAACTCTTCTACATTTTAA
AA sequence Show only first row Show all	>Potri.011G005100.1 pacid=42780803 polypeptide=Potri.011G005100.1.p locus=Potri.011G005100 ID=Potri.011G005100.1.v4.1 annot-version=v4.1 MFRFLCKSLGLGCSIRPSSSVHQELHYFLENPSILSCLRNISSVNSDDVKEHSFTVSYLMNICGFSLKPALEVSKQVHFETPGNADSVLEIFKNHGFSKA HILNLVRRWPRVLLCKPHRTLLPKLGFFHSKGFSSPDVVKIISTYPWILRISFENKLVPAFDFFENLLQSDAMAIKAVKLDPRLLDAGLEKAARIVDILL ENGVPMKNIALSVRIKPGIMLSNLENFKRLVQKASLMGFHPSKSQFVVAIVLLRSMTTSTWEKKLDVYRRWGLSQEEILAAFVKNPWFMSLSEEKITAVM DLFVNQLGWESSYLAKNPTIPSYSLDKRLVPRALLLQFLVSKGLVEKSFRSTAFFYTPENKFRQMFINHRSESTQILKFYNEKLNLSSVVNSSTF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.011G005100 [exp]	0	1
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	2.82	0.9124	HMGB906,ATHMG.1
AT3G07870			F-box and associated interacti...		Potri.001G396800 [exp]	3.16	0.8932
					Potri.012G100001 [exp]	3.46	0.8972
AT4G20325			unknown protein		Potri.006G280600 [exp]	5.47	0.9033
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	7.34	0.8897
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	7.74	0.8777
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G009800 [exp]	7.74	0.8639
AT5G07610			F-box family protein (.1)		Potri.008G016300 [exp]	7.93	0.8867
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	12.36	0.8780
					Potri.010G007250 [exp]	12.40	0.8645

Compare expression of checked genes

Potri.011G005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.