Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 212 / 4e-58 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G14470 209 / 2e-57 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 94 / 1e-19 NB-ARC domain-containing disease resistance protein (.1) AT1G58400 94 / 1e-19 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 91 / 8e-19 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G12210 88 / 9e-18 RFL1 RPS5-like 1 (.1) AT1G62630 86 / 2e-17 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 84 / 2e-16 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 84 / 2e-16 NB-ARC domain-containing disease resistance protein (.1) AT3G46730 82 / 8e-16 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G121500 [exp] 275 / 3e-80 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 268 / 1e-77 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 255 / 1e-73 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261600 [exp] 256 / 6e-73 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.014G002900 [exp] 244 / 3e-69 AT3G14470 397 / 2e-119 NB-ARC domain-containing disease resistance protein (.1) Potri.017G138100 [exp] 242 / 1e-68 AT3G14470 397 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.003G015500 [exp] 238 / 2e-67 AT3G14470 402 / 1e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 238 / 9e-67 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136400 [exp] 233 / 9e-66 AT3G14470 413 / 5e-128 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005321 [exp] 242 / 3e-68 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 215 / 3e-59 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 213 / 2e-58 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 208 / 8e-57 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 207 / 3e-56 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 206 / 7e-56 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10042117 [exp] 194 / 3e-52 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 191 / 5e-51 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 190 / 9e-51 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 189 / 2e-50 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G005700.3 pacid=42782100 polypeptide=Potri.011G005700.3.p locus=Potri.011G005700 ID=Potri.011G005700.3.v4.1 annot-version=v4.1 ATGCGGTTCAAACGCAAAGAAAGTGAGTGGTTGAGGGTGCAAGGGAGCGAATTATGGAATAATGATGGAGGGGAGAATAAAATACTACTGGTCCTAAAGT TGAGTTTCGATCATCTGCCATCACATTTAAAGAGATGCTTTGCTTTTTGTGCGGTTTTTCCGAAGAAATTTGAAATATGCAAGGAAAAGTTGATCCATCA ATGGATTGCCGGGGGTTTAGCTCAACGTTCTGCTCATGATCGGGTGTCCAAACCTGAAGACATCGGCTCCGACTATCTCAATGATCTGCTAAGGATGTCT TTTTTGGAAGTGGTGAGTGGATGTGGTGACAGCAGCACGACAAGGATTAAAATGCATGATCTTGCTATATCAGTTGCTGGTAATGAATTCCTCGCTGCAG GGAAGACTGAACAACAAGGGACCTTGGAACAGAGCCACTCCTTGCCAAAAGTGTGTGATTTCTTCACAACAACTAGACATGCTGTGGTTGATTGCAATTC TTCGTCCGGCCTGATTCATAAAGCCTTGTACAGAGCAAAGGGATTGCGTACCCACAATTTGTTGTCTCTAGGAGATGCATCGGAGAAAGCCATCAGGAAT TTAATTTCAAGCTTCAAGTACCTCAGAATTTTGAATTTGAGTGGGTTTGGCATAAAACATTTGCACAAATCTGTTGGTGACTTGACATACCCGAGATATC TTGATCTCTCCAACACTCCAATTGAAAAATTACCAGCATCTATTTGTAACCTTCAATTGCAGACACTAGATTTATCAAGTTGCTATAATCTTCAAAAGTT ACCCAAAAAGACGAGAATAATGACCAGCCTGAGACATCTGAAGATAAAAAACTGTACAAGACTTGCTCGCTTGCCAGGTTTTATTGGGAGATTGAGAAAT CTTCAGAGCATGCCTATATTTATAGCTGGCAAAACATGGGAGGAAGGCATATTGCAGTTACTAGAGCTACAAAATCTTCCAGGTGAACTGAAAATAAAAC ACCTCGAGAATGTAGAACGTCGCCATGTTGCAAGAACATGTTTAATTTCAGAAGATCTTCCTGGGAATAGACGTGACTATTGTTTGGAAAATATGCAACT TAACTCGTTGGGATTGTCATGGGGAGATGCTGATGAACATAAGCTGAGTGTTAGCATGAGGGGACCAAGAAGCCAAACTGGACATCATAGTGTTGAAACT GCAAGGATTTTACTTGATTCAACATTGAAGCCAAACTCCAGGATAAAGAAGTTGTTTGTGAATGGCTATCCAGGAACTGAGTTTCCAAATTGGATGAACA CAGCCGCCCTCTGCAATCTGATACAACTTGAGTTAGCCAACTGCACAAATAGTGAAAGCCTCCCCACGCTTGGGGAATTGCCGCTGCTGAAAGTTCTCCG TATCCAAGGAATGGATTCTGTAGTGAACATCGGCAATGAGTTCTTTGGTGGCATGAGAGCTTTTTCATCATTGACCGAGTTCTCTCTCAAAGATTTTCCC AAGTTGGAAACCTGGAGCACCAATCCGGTGGAAGCATTCACTTGCTTGAACAAATTAACTATCATCAACTGCCCAGTTTTGATCACCATGCCATGGATCT CTTCAACATGTAGAGATCAGAAACTGCCACCCAGTGATGCTACGGTCAGTAGCACAGCTACGATCAATCTCCACTCTCATTATTGGCAATTCTCCGGAGT TACTCTATATACCAAAAGCACTCATAGAAAACAACTTGCTTCTCTCGTCTTTGACAATTTCCTCCTGTCCCAAACTTCGTTCATTGCCTGCAAATGTTGG GCAACTCCAGAACTTGAAGTTTCTAAAAATAGGCTGGTTTCAGGAGCTACACTCTTTGCCACATGGTTTGACAAATCTGACTTCTCTGGAGTCCTTGGAG ATTATTGA
AA sequence Show only first row Show all	>Potri.011G005700.3 pacid=42782100 polypeptide=Potri.011G005700.3.p locus=Potri.011G005700 ID=Potri.011G005700.3.v4.1 annot-version=v4.1 MRFKRKESEWLRVQGSELWNNDGGENKILLVLKLSFDHLPSHLKRCFAFCAVFPKKFEICKEKLIHQWIAGGLAQRSAHDRVSKPEDIGSDYLNDLLRMS FLEVVSGCGDSSTTRIKMHDLAISVAGNEFLAAGKTEQQGTLEQSHSLPKVCDFFTTTRHAVVDCNSSSGLIHKALYRAKGLRTHNLLSLGDASEKAIRN LISSFKYLRILNLSGFGIKHLHKSVGDLTYPRYLDLSNTPIEKLPASICNLQLQTLDLSSCYNLQKLPKKTRIMTSLRHLKIKNCTRLARLPGFIGRLRN LQSMPIFIAGKTWEEGILQLLELQNLPGELKIKHLENVERRHVARTCLISEDLPGNRRDYCLENMQLNSLGLSWGDADEHKLSVSMRGPRSQTGHHSVET ARILLDSTLKPNSRIKKLFVNGYPGTEFPNWMNTAALCNLIQLELANCTNSESLPTLGELPLLKVLRIQGMDSVVNIGNEFFGGMRAFSSLTEFSLKDFP KLETWSTNPVEAFTCLNKLTIINCPVLITMPWISSTCRDQKLPPSDATVSSTATINLHSHYWQFSGVTLYTKSTHRKQLASLVFDNFLLSQTSFIACKCW ATPELEVSKNRLVSGATLFATWFDKSDFSGVLGDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14460			LRR and NB-ARC domains-contain...		Potri.011G005700 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Potri.016G131300 [exp]	7.41	0.7880
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123200 [exp]	9.79	0.7649
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003600 [exp]	12.96	0.7712
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	14.96	0.7444
AT5G09850			Transcription elongation facto...		Potri.001G307600 [exp]	14.96	0.7086
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047000 [exp]	19.97	0.7704
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123500 [exp]	21.63	0.7224
AT1G75280			NmrA-like negative transcripti...		Potri.019G078100 [exp]	23.68	0.7234
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Potri.001G204200 [exp]	29.64	0.6056	Pt-ETR1.1,ETR3
AT3G14470			NB-ARC domain-containing disea...		Potri.012G122900 [exp]	32.40	0.7179

Compare expression of checked genes

Potri.011G005700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.