Plant FIBer expression Database

Potri.011G006000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G006000.2 pacid=42781853 polypeptide=Potri.011G006000.2.p locus=Potri.011G006000 ID=Potri.011G006000.2.v4.1 annot-version=v4.1
ATGAGAGGATTGCTTATTAAAATCTTTTTATACTTGCATAACTCTTGTGTTTATCATTTCTCATTTTATCCTTTGTTTTGTCGGGTTTGCAAACAAGATC
CTAACATCTCGCCAGCAGCGCTGCCTACTGCCTTCAACGCCAGCCTCCATCTCCACTTTCCACCATCACCAAACCCTCCCTTCAAACCAATCACTACGGT
AGCCCAGCCGCCACTACCCACTGCTCAGCACCCACACACAAACCACCGTCGCCAACCAGCAGCAGACCCAAACAATTGCATCGCCATTTTCGTCCAAACC
CCCATCACCGATCGTAATCATCACGCCGGCAAGAAAACCACAGCCCCCATCGCCATACTTCAAACCTCCACGCTCCTCACATCGACTGCCCTCTCTCTCG
CCAAGCAATCACCACGCGTCGTTCATCTCATCACCAAACCACCACACACCACCACACAGCAAACACCCAGAGCATCCCAAACTCACCAAATCAGTCACCG
AAAACAGCACCACCTCCAACAACCAAAGACAGCAGCGGTAATAACGAAAGAGGGAAAGACAGCAGAACCAAAAGGCCCTGATCTCCCTCGGCAGTTGTTG
GTGAATAACGCCACTATCACGGACAGGTAG
AA sequence
>Potri.011G006000.2 pacid=42781853 polypeptide=Potri.011G006000.2.p locus=Potri.011G006000 ID=Potri.011G006000.2.v4.1 annot-version=v4.1
MRGLLIKIFLYLHNSCVYHFSFYPLFCRVCKQDPNISPAALPTAFNASLHLHFPPSPNPPFKPITTVAQPPLPTAQHPHTNHRRQPAADPNNCIAIFVQT
PITDRNHHAGKKTTAPIAILQTSTLLTSTALSLAKQSPRVVHLITKPPHTTTQQTPRASQTHQISHRKQHHLQQPKTAAVITKEGKTAEPKGPDLPRQLL
VNNATITDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G006000
[exp]
0 1
AT5G45890 SAG12 senescence-associated gene 12 ... Potri.013G118200
[exp]
6.85 0.9427
AT4G17565 F-box family protein with a do... Potri.004G134900
[exp]
12.72 0.9349
AT1G43760 DNAse I-like superfamily prote... Potri.014G188801
[exp]
14.56 0.9321
AT2G05920 Subtilase family protein (.1) Potri.001G113533
[exp]
19.07 0.9271
AT3G04280 ARR22 response regulator 22 (.1.2.3) Potri.003G177300
[exp]
20.39 0.9271
Potri.014G045150
[exp]
23.91 0.9271
Potri.019G036825
[exp]
26.00 0.9271
AT3G58610 ketol-acid reductoisomerase (.... Potri.019G089366
[exp]
26.98 0.9271
AT1G32583 unknown protein Potri.010G145501
[exp]
33.04 0.9271
AT4G30880 Bifunctional inhibitor/lipid-t... Potri.009G048900
[exp]
37.46 0.9271

Potri.011G006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.