Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11820 805 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 568 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 557 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G13560 456 / 2e-156 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 360 / 1e-119 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 334 / 9e-109 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 330 / 3e-108 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 330 / 3e-107 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 327 / 9e-107 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 303 / 4e-97 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G010500 [exp] 946 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G108500 [exp] 593 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.017G130200 [exp] 592 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 588 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G133200 [exp] 577 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 459 / 8e-158 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 457 / 2e-157 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 345 / 2e-113 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 342 / 1e-112 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031456 [exp] 780 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10013465 [exp] 593 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 580 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 575 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10007929 [exp] 575 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 561 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 466 / 2e-160 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 425 / 9e-145 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 354 / 5e-117 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 331 / 2e-108 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.011G006100.1 pacid=42782170 polypeptide=Potri.011G006100.1.p locus=Potri.011G006100 ID=Potri.011G006100.1.v4.1 annot-version=v4.1 ATGGCACTCTCTAAGCTTCCTCTCTCCACTATCTTCTTCTTGTTGTGCACTTCGCTTTTTACAATATCACAAGCTTTATCATCGAAAATAGCAGTGGCGC AAATCAAGGACCAACAAGATAATGAGCCGTTTGTGGGAATCAACATAGGAGTAGATGTGTCCAATCTAATGTCAGCAACAGAGCTTGTTTCGCTTCTACA ATTTCAAAAGGTTACACATATCAGGCTTTATGATGCCGACCCTGACATGCTCAAGGCCTTGGCTAAAACCAAGATCCGGGTCATTATTAGTGTCCCAAAT AATCAGCTTCTTGCTATTGGCTCCTCTAATGCAACAGCAGCTTCTTGGATTGGTAAAAATGTTGTTGCTTATTATCCACAAACTGTAATTTCTGCAATTG CTGTTGGTGATGAAGTTTTGACTACTGTACCCTCTTCAGCCCCTTTGCTTGTGCCAGCTATTGAGTCTCTTTATAGTGCTTTAGTGGCTGCAAACTTGCA TAATCTGATCAAGATTTCAACTCCACATTCTGCTTCAATAATTCTTGATCCATTTCCACCTTCCCAGGCTTTTTTTAATCAGAGTTGGAGCTCCGTTATG CAACCTTTGCTTCAGTTTTTATCAAAAACTGGCTCTCCTTTGATGATGAATCTTTATCCTTACTATGTGTTTATGCAAAATAAAGGAGTGGTGCCGCTTG AAAATTCTTTGTTTAAGCCCTTGACGCCGTCTAAAGAAATGGTTGATCCTAATACTTTGTTGCATTACACTAATGTTCTTGATGCTATGGTTGATGCTGC TTATTATTCGATGAAGAATTTTAATTTTACTGATGTTGCGGTTCTTGTTACTGAGAGTGGTTGGCCTTCAAAGGGTGATTCGAAGGAGCCTTATGCTACA ATAGACAACGCAGATACTTATAATTCTAATATGATTAAGCATGTTCTTGATCGAAGCGGGACTCCTTTGCACCCGGAAATCACTTCTAGTGTGTACTTAT ATGAGTTGTTCAATGAGGACTTGAGGTCACCACCGGTATCAGAAGCAAATTGGGGATTGTTTTATGCAAATGCGACGCCAGTTTATTTGCTTCATGTATC TGGAAGTGGGACTTTTTTGGCTAATGATACCACCAACCAAACATATTGTATTGTTATGGATGGTGTTGATTCAAAGACATTGCAAGCAGCATTGGATTGG GCATGTGGACCAGGACAGGCTAATTGCAGTGAGATTCAGCCAGGGGAGAATTGCTACCAGCCTAATAATGTGAAGAACCATGCCTCTTATGCATTTGATA GTTATTACCAGAAGGAAGGAAGGGCTGCTGGGTCCTGTGATTTCAAGGGTGTAGCCATGATCACCACTACTGATCCAAGTCATGGAAGCTGTATATTTCC TGGAAGCAAGAAAATAACGAATAAGACGAGGACGGTAGTGAATACAACCACGCCAAGCAATGCAGCAGGTGGTTCAAGATTAATCAGCTTCAGAAGCAGT AGAATTAGTGCAATGGACAAGGCATTGCAAGCTTTCTTGACTATAATTTTCTCTATTTTGTTACACATTCCTTTTGTGGTGTCTTGA
AA sequence Show only first row Show all	>Potri.011G006100.1 pacid=42782170 polypeptide=Potri.011G006100.1.p locus=Potri.011G006100 ID=Potri.011G006100.1.v4.1 annot-version=v4.1 MALSKLPLSTIFFLLCTSLFTISQALSSKIAVAQIKDQQDNEPFVGINIGVDVSNLMSATELVSLLQFQKVTHIRLYDADPDMLKALAKTKIRVIISVPN NQLLAIGSSNATAASWIGKNVVAYYPQTVISAIAVGDEVLTTVPSSAPLLVPAIESLYSALVAANLHNLIKISTPHSASIILDPFPPSQAFFNQSWSSVM QPLLQFLSKTGSPLMMNLYPYYVFMQNKGVVPLENSLFKPLTPSKEMVDPNTLLHYTNVLDAMVDAAYYSMKNFNFTDVAVLVTESGWPSKGDSKEPYAT IDNADTYNSNMIKHVLDRSGTPLHPEITSSVYLYELFNEDLRSPPVSEANWGLFYANATPVYLLHVSGSGTFLANDTTNQTYCIVMDGVDSKTLQAALDW ACGPGQANCSEIQPGENCYQPNNVKNHASYAFDSYYQKEGRAAGSCDFKGVAMITTTDPSHGSCIFPGSKKITNKTRTVVNTTTPSNAAGGSRLISFRSS RISAMDKALQAFLTIIFSILLHIPFVVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	0	1
AT1G45688			unknown protein		Potri.001G183600 [exp]	2.00	0.8262
AT2G22900			Galactosyl transferase GMA12/M...		Potri.014G006100 [exp]	3.00	0.8618	GT6.2
AT4G13990			Exostosin family protein (.1)		Potri.001G321000 [exp]	5.29	0.8201
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.002G014100 [exp]	6.00	0.8066
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.001G278300 [exp]	6.48	0.8320
AT5G64860		DPE1	disproportionating enzyme (.1)		Potri.007G081400 [exp]	7.34	0.7962	DPE1.1
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Potri.004G183500 [exp]	8.48	0.8111
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	8.94	0.7936
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	9.38	0.8126
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	9.74	0.7940

Compare expression of checked genes

Potri.011G006100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.