Plant FIBer expression Database

Potri.011G006500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs

No hit found
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G006500.3 pacid=42781503 polypeptide=Potri.011G006500.3.p locus=Potri.011G006500 ID=Potri.011G006500.3.v4.1 annot-version=v4.1
ATGGGGAAAAGACATCCAACTCTGATTATCTCCCTGGTTATGACTTTGGATCTGGATCTGGTTTTGGTGGTGGAGCTGGTTTTGGTGGTGGAGCTGGAAA
GGGAAGGCTTGGTGGTGGGGGAGGGGGCGGGGGGAGGGGGCGGGGGAGGAGGGGGAGGAGGAGGGGGAGGTGGTGGAGGTGGTAAAAAAGGTGGAGGGTC
TGGCTTCGGCTTTGGAAGTGGATTTGGGTCTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGCGGGGGCGGTGGGGGCGGTGATTCTCAAGGT
GGTGGGAAAGGTGGTGGTTACGGTGGTGGGTTTGGAGGTGGGTTTGGAGGTGCACGGCCTTGA
AA sequence
>Potri.011G006500.3 pacid=42781503 polypeptide=Potri.011G006500.3.p locus=Potri.011G006500 ID=Potri.011G006500.3.v4.1 annot-version=v4.1
MGKRHPTLIISLVMTLDLDLVLVVELVLVVELEREGLVVGEGAGGGGGGGGGGGGGGGGGGKKGGGSGFGFGSGFGSGGGGGGGGGGGGGGGGGGGDSQG
GGKGGGYGGGFGGGFGGARP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G006500
[exp]
0 1
AT1G63710 CYP86A7 "cytochrome P450, family 86, s... Potri.003G129100
[exp]
1.00 0.9992 Pt-CYP86.7
AT1G69530 ATHEXPALPHA1.2,... EXPANSIN 1, expansin A1 (.1.2.... Potri.004G123200
[exp]
3.46 0.9960 Pt-EXP2.4
AT2G04570 GDSL-like Lipase/Acylhydrolase... Potri.014G160100
[exp]
6.00 0.9936
AT4G33800 unknown protein Potri.002G117600
[exp]
7.48 0.9933
AT3G15850 JB67, FADB, ADS... FATTY ACID DESATURASE B, fatty... Potri.011G152100
[exp]
9.48 0.9916
AT1G29450 SAUR-like auxin-responsive pro... Potri.004G181500
[exp]
10.19 0.9918
AT4G24350 Phosphorylase superfamily prot... Potri.013G080300
[exp]
10.48 0.9905
AT1G35180 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.005G231600
[exp]
12.12 0.9621
AT5G18020 SAUR-like auxin-responsive pro... Potri.009G126400
[exp]
12.96 0.9891
AT2G18360 alpha/beta-Hydrolases superfam... Potri.009G117000
[exp]
13.49 0.9884

Potri.011G006500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.