Plant FIBer expression Database

Potri.011G006700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G62250 326 / 5e-113 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G006700.2 pacid=42782435 polypeptide=Potri.011G006700.2.p locus=Potri.011G006700 ID=Potri.011G006700.2.v4.1 annot-version=v4.1
ATGGGAACCATCTATCCATCAGGAATTATTAGCAAGTGCAGCGCATATCTGGGTGTTAACACGCATCATGATGCTTCTTTTTGCAAGATTACTTATGTCA
ATACTTTGAGGACTGCCTTTTCTCCTAGAATTGTATGTGGTCCTTGCAGTAATGTAGCGAATGATTCCACAATTTCTTGGAAGGGGTGCAGCCAATTCAG
AACCCATCATGTATTACAGCGACTGGCTTCAAATAGGTGGCTGTGCCGATCACATGATTCTAATTCACCTGATGATGAGTATCGTTCTTCTCGAAACATA
GCAATCAGTTTGTTTAGGCGATACAGGAATGTTATTGACCGTGGAGGAGGTGACAACTTAAAAGAATTTATCAGTGCTGGAGTGAATGCATATGCTGTTG
GCTGCACTGAAGAAGGATTACGTAAGGAACTTACTGCTATTAGAGAATCTGGTGATGAAATCGAAGCATTGCAGAATTATGGTGGGAGCACCAGTGTGAA
GTCCAAGATATTTGCTGAGGAGGTTGATGAGTGTATTCTGTGGTTGAGCATTATATTTATCACAATCTTGTGTACACCACAACCAACTATAGTTCGATGG
TCATCTACGCCTCCAGTGTCAGATGACATACGGCTTCAGTGGAAAGGGTTTTGTGCGATCATAGCAAATGCTTACTACATGAGAGGAATGGCATGGCTTC
CAGTTAAGACGCTTCAGCTAGAACAAATGGCAGTTTCAGGACGTGCTGAGGAGCCATCAGTTGTTGCCAGCCGAATGCGACTTGTTTTCAGCACACTTGA
GGTAGTAAGTCCACAATGGCCAAGAGTCTAA
AA sequence
>Potri.011G006700.2 pacid=42782435 polypeptide=Potri.011G006700.2.p locus=Potri.011G006700 ID=Potri.011G006700.2.v4.1 annot-version=v4.1
MGTIYPSGIISKCSAYLGVNTHHDASFCKITYVNTLRTAFSPRIVCGPCSNVANDSTISWKGCSQFRTHHVLQRLASNRWLCRSHDSNSPDDEYRSSRNI
AISLFRRYRNVIDRGGGDNLKEFISAGVNAYAVGCTEEGLRKELTAIRESGDEIEALQNYGGSTSVKSKIFAEEVDECILWLSIIFITILCTPQPTIVRW
SSTPPVSDDIRLQWKGFCAIIANAYYMRGMAWLPVKTLQLEQMAVSGRAEEPSVVASRMRLVFSTLEVVSPQWPRV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G62250 unknown protein Potri.011G006700
[exp]
0 1
AT5G43850 ATARD4 RmlC-like cupins superfamily p... Potri.008G157400
[exp]
2.00 0.9540
AT3G61470 LHCA2 photosystem I light harvesting... Potri.003G171500
[exp]
6.40 0.9576 LHCA2.1,Lhca2-2
AT1G23740 AOR alkenal/one oxidoreductase, Ox... Potri.016G136100
[exp]
9.94 0.9525
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Potri.003G219000
[exp]
10.81 0.9359
AT5G09650 ATPPA6 pyrophosphorylase 6 (.1) Potri.001G286900
[exp]
13.41 0.9319
AT2G40100 LHCB4.3 light harvesting complex photo... Potri.008G067300
[exp]
16.24 0.9447 Lhcb8,LHCB4.1
AT4G38970 FBA2 fructose-bisphosphate aldolase... Potri.009G124100
[exp]
17.60 0.9479
AT3G56940 CRD1, CHL27, AC... COPPER RESPONSE DEFECT 1, dica... Potri.016G025000
[exp]
20.00 0.9382 AT103.1
AT1G54780 AtTLP18.3, TLP1... thylakoid lumen protein 18.3, ... Potri.013G026400
[exp]
21.44 0.9489
AT5G23850 Arabidopsis thaliana protein o... Potri.002G157800
[exp]
23.97 0.9242

Potri.011G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.