Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22030 368 / 5e-122 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G04480 348 / 2e-117 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G009500 [exp] 587 / 0 AT4G22030 410 / 8e-139 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.011G006900 [exp] 584 / 0 AT4G22030 362 / 9e-120 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009000 [exp] 582 / 0 AT4G22030 392 / 8e-132 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G008800 [exp] 580 / 0 AT4G22030 395 / 6e-133 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009300 [exp] 574 / 0 AT4G22030 390 / 7e-131 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009100 [exp] 376 / 4e-128 AT4G04480 332 / 5e-111 unknown protein Potri.004G008000 [exp] 375 / 8e-128 AT4G04480 333 / 2e-111 unknown protein Potri.004G009400 [exp] 370 / 1e-125 AT4G04480 327 / 3e-109 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020029 [exp] 347 / 1e-116 AT4G22030 351 / 2e-115 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10020028 [exp] 343 / 8e-115 AT4G04480 335 / 2e-112 unknown protein Lus10015549 [exp] 133 / 2e-33 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10015548 [exp] 113 / 3e-30 AT4G04480 106 / 4e-28 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14476 [poplar] [flax] Chloroplast_duf Petal formation-expressed
Representative CDS sequence Show only first row Show all	>Potri.011G007000.1 pacid=42780902 polypeptide=Potri.011G007000.1.p locus=Potri.011G007000 ID=Potri.011G007000.1.v4.1 annot-version=v4.1 ATGTCATCTTTGCAAGCTTCAAGCTTTCTTTTCTCTTCTACTTGTAGTTGTTCAACAAGAACCCACGCAGCCATTTCAATCCCAAAACTTCCAAGAATTC CTTTTTCAGCTCCAAAAAATCCTTTGAAACCGGTTGAGGATTTGAATTTACGAGATGGGTTCAAAGGTACAATCCCATTAGAAAACAATAATGTTGCAAA TAACACAAGACTTGATCAATATGAGCCAATCATTTCTACAACCAGTACTACAGCAACAGCCAAGCTTTACGCGATCTTGGAAGCTGTTGGTGATAGAGTA GAGATGCATGGAAATATTGGCGAGCAACGTGACAACTGGAACAAACTTCTTTTGAACTCAATTAATATGATCACTCTCACAGCTGCAACTATGGCTGGTG TAGCAGCAGGTGGCGCAGCAGGAGCTCCACTTATGGCTTTGAAGTTATCATCAACTCTTTTATTTTCTGCTGCTACAGGAATGTTAATCATCATGAACAA AATCCAACCTTCACAGCTCGCAGAAGAGCAAAGAAATGCCACAAGATTGTTCAAGCAACTTTATAGCCAAATACAAAACACACTAGCTCTTCATGATCCT ACTGATACAGATGTGAAGGATACAATGGACAGGGTTTTGGCTCTTGATGAAGCTTATCCTCTTCCTTTGCTAGGGAAAATGATTGAAAAGTTTCCTGACA AATTTGAGCCTGCTATTTGGTGGCCTAAGTCAAACAAGTCTCACAGTAGAAAACACGTGAAAGCACAAGGAAAGAATGGATGGAGTGAGGATCTTGAAGA GGAAATGAGGGTGCTGATTGAAGTGATAAAGAGAAAAGACAGTGAAGACTATATGAGACTTGGGAACTTGGCATTGAAGGTGAACAAGATTTTAGCCGTC TCAGGTCCATTGCTAACTGGCATTGCAGCTGCTGGGTCTGCCTTTGTAGGCCATGGATCATGGGCAGCAATCGTGGCAGTCACAGCAGGTGCATTGGCGA GCACAGTAAATACATTTGAGCACGGTGGCCAAGTTGGTATGGTGGTTGAAATGTATAGAAACAGTGCTGGATTCTTTACTCTTTTGGAGGAATCAATTGA ATCCACAATTCAAGAGAAAGATTTCGAGGAAAGGGAAGATGGAGAAATGTCTGAAATGAGTGTAGCGTTGAAGCTTGGAAGAAGCTTGTCACAGCTTAGA GATCTTGCCAGAAAATCAACTTCTTCTCATATAGATGGAAGCACCATAGATGAGTTTGCTAGCAAACTATTTTGA
AA sequence Show only first row Show all	>Potri.011G007000.1 pacid=42780902 polypeptide=Potri.011G007000.1.p locus=Potri.011G007000 ID=Potri.011G007000.1.v4.1 annot-version=v4.1 MSSLQASSFLFSSTCSCSTRTHAAISIPKLPRIPFSAPKNPLKPVEDLNLRDGFKGTIPLENNNVANNTRLDQYEPIISTTSTTATAKLYAILEAVGDRV EMHGNIGEQRDNWNKLLLNSINMITLTAATMAGVAAGGAAGAPLMALKLSSTLLFSAATGMLIIMNKIQPSQLAEEQRNATRLFKQLYSQIQNTLALHDP TDTDVKDTMDRVLALDEAYPLPLLGKMIEKFPDKFEPAIWWPKSNKSHSRKHVKAQGKNGWSEDLEEEMRVLIEVIKRKDSEDYMRLGNLALKVNKILAV SGPLLTGIAAAGSAFVGHGSWAAIVAVTAGALASTVNTFEHGGQVGMVVEMYRNSAGFFTLLEESIESTIQEKDFEEREDGEMSEMSVALKLGRSLSQLR DLARKSTSSHIDGSTIDEFASKLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22030			F-box family protein with a do...		Potri.011G007000 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.001G007700 [exp]	10.63	0.7479
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.004G177700 [exp]	20.73	0.6462
AT4G24480			Protein kinase superfamily pro...		Potri.005G153100 [exp]	24.18	0.6205
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.001G389300 [exp]	28.42	0.6571
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.012G020100 [exp]	29.17	0.5787
AT1G11660			heat shock protein 70 (Hsp 70)...		Potri.011G139100 [exp]	41.24	0.6253
AT1G79570			Protein kinase superfamily pro...		Potri.005G095200 [exp]	72.74	0.5287
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Potri.009G103000 [exp]	141.41	0.5427
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	160.75	0.5358	Pt-XPO1.1
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Potri.005G060900 [exp]	171.68	0.5321

Compare expression of checked genes

Potri.011G007000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.