Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04470 229 / 2e-77 PMP22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 226 / 4e-76 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT5G19750 68 / 7e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43140 58 / 2e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT3G24570 58 / 2e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G33905 41 / 0.0002 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G14860 41 / 0.0002 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G008700 [exp] 296 / 6e-104 AT4G04470 209 / 2e-69 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.010G068900 [exp] 185 / 5e-60 AT4G14305 252 / 1e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.004G009201 [exp] 102 / 7e-29 AT4G14305 72 / 2e-17 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.016G029700 [exp] 73 / 2e-15 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.006G032500 [exp] 71 / 1e-14 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G081600 [exp] 64 / 1e-12 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G037100 [exp] 62 / 8e-12 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.009G090600 [exp] 43 / 4e-05 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020027 [exp] 246 / 6e-84 AT4G04470 259 / 2e-89 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011798 [exp] 202 / 9e-67 AT4G14305 262 / 1e-90 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10034922 [exp] 71 / 2e-15 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 71 / 4e-15 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10012098 [exp] 67 / 2e-13 AT5G19750 259 / 4e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10010446 [exp] 66 / 6e-13 AT5G19750 258 / 2e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10039003 [exp] 65 / 8e-13 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10038626 [exp] 62 / 4e-12 AT3G24570 273 / 1e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10011679 [exp] 61 / 2e-11 AT3G24570 249 / 2e-84 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10022130 [exp] 54 / 6e-09 AT3G24570 256 / 6e-87 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [poplar] [flax] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Potri.011G007100.1 pacid=42782440 polypeptide=Potri.011G007100.1.p locus=Potri.011G007100 ID=Potri.011G007100.1.v4.1 annot-version=v4.1 ATGGGATCAGTAGCAAAGAAGGGACTGCAACAGTATATGTTACAGCTTCAACAACACCCCTTAAGAACTAAGGCAATTACAGCAGGGGTGTTGTCAGCTC TCAGTGACATAGTATCACAGAAACTCTCTGGCATTCAGAAACTTCAAATTAAAAGGATTTTGCTCAAAGTGCTTTTTGGGTTTGGATATCTTGGACCATT CGGCCATTACCTACATATACTACTGGATAAACTTTTCAAGGGAAAGAAGGATACAACAACAGTTGCCAAGAAGGTGGCAGTGGAGCAGTTGACAGCTTCT CCTTGGAACAACTTGGTTTTCATGGTTTATTATGGGATGGTTATCGATGGAAGACCCTGGTTGCAGGTGAAAACTAAACTGAAGAAGGAATACCCAGCAG TGCAGTTCACATCATGGACGTTCTGGCCTGTTGTCGGGTGGGTAAATCACCAGTACATACCACAGCAATTCCGTGTCATCTTCCACAGCCTTATCGCAGT CGGCTGGGGAATATTTCTGAATCTCCGAGCAAGGTCCATGGCGTTGACCAAAGGCTAA
AA sequence Show only first row Show all	>Potri.011G007100.1 pacid=42782440 polypeptide=Potri.011G007100.1.p locus=Potri.011G007100 ID=Potri.011G007100.1.v4.1 annot-version=v4.1 MGSVAKKGLQQYMLQLQQHPLRTKAITAGVLSALSDIVSQKLSGIQKLQIKRILLKVLFGFGYLGPFGHYLHILLDKLFKGKKDTTTVAKKVAVEQLTAS PWNNLVFMVYYGMVIDGRPWLQVKTKLKKEYPAVQFTSWTFWPVVGWVNHQYIPQQFRVIFHSLIAVGWGIFLNLRARSMALTKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Potri.011G007100 [exp]	0	1
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Potri.007G126600 [exp]	1.00	0.7947
AT5G64500			Major facilitator superfamily ...		Potri.009G081100 [exp]	3.87	0.7243
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096000 [exp]	5.29	0.7449	Pt-ADGT.3
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.001G302000 [exp]	6.48	0.7278
AT5G47530			Auxin-responsive family protei...		Potri.006G015000 [exp]	10.58	0.6955
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	15.16	0.7464
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.002G096800 [exp]	15.55	0.7098
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.013G053400 [exp]	15.90	0.7328	SIP1.3
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.003G188500 [exp]	16.67	0.7569	Pt-4CL.4
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.008G144600 [exp]	20.78	0.7392

Compare expression of checked genes

Potri.011G007100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.