Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55090 326 / 4e-107 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT1G05100 310 / 3e-102 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT4G26890 309 / 1e-100 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT2G32510 299 / 1e-97 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT3G50310 241 / 1e-75 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 231 / 1e-71 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 223 / 9e-69 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT1G07150 210 / 6e-62 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT2G30040 202 / 2e-59 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT1G54960 204 / 1e-58 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G007700 [exp] 678 / 0 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.002G228200 [exp] 377 / 8e-128 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.014G155000 [exp] 369 / 3e-125 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.001G278600 [exp] 226 / 4e-68 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.009G073200 [exp] 226 / 4e-68 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.003G130000 [exp] 221 / 1e-67 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.007G044800 [exp] 215 / 2e-65 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 210 / 2e-63 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 206 / 6e-62 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030042 [exp] 320 / 4e-105 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10035284 [exp] 314 / 1e-102 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10022951 [exp] 306 / 2e-99 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10021551 [exp] 301 / 1e-96 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10031544 [exp] 268 / 2e-83 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10012668 [exp] 214 / 5e-65 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034060 [exp] 211 / 7e-61 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 209 / 4e-60 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 200 / 7e-57 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 194 / 9e-55 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G007400.1 pacid=42781470 polypeptide=Potri.011G007400.1.p locus=Potri.011G007400 ID=Potri.011G007400.1.v4.1 annot-version=v4.1 ATGTGCTGTGTGTGTGTATATATATATATAGAATATAACTACCAATGCAAACAATTCAGCAAGCATAATACACATTCTTTAAATTTTGTCACACCCCCCA CCTTTCTCTCCAAAATGGACTGGACTAGAGGCCAAACCATTGGCCATGGCTCCTCGGCCACCGTCTCGATGGCCAAGGCCAACCGGTCCGGTCAAGTCTT TGCGGTTAAGTCAGCTGAGCTATTGAAATCGGAGTCTCTCCAAAGAGAGCAAAGTATTCTTTCAACATTGAAGTGTCCACAAATTGTGGTGTACAAGGGG TGTGACATTACTAACGAGAATGGTAAGTTGTTCTATAATCTTTTCTTGGAGTACATATCCGGTGGCACGCTTATCGATGCGATTCGGGAGGGCGGAGGCT GTCTCGACGAGGCTATGATCAGATTGTATGCCCGGACGATTTTGCTTGGCCTTGAGTACCTCCATTGTAATGGTATAGTGCATTGTGACATTAAGGGTCA TAATATTTTGGTCACCGGTGATGGGGCAAAAATTGCTGACTTGGGTTGTGCTAAGAGGGTTGATGAGGTGTCGGGGGATACTGCTTTGAAAACGACAGCG CCAATTGCAGGCACTCCGCTTTACATGGCACCTGAGGTGGCGCGTGGGGAGCACCAAGGGTTCCCTGCTGATATCTGGTCTGTCGGGTGCACCGTTGTTG AGATGGCTACCGGACAAGCTCCATGGGTGAATGTCTCAGACCCAGTTTCAGCCCTTTACCAAATTGGGTTTTCAGGTAACGTGCCAGAGATTCCAAGCTT CATGTCTAAGCAAGCCAAGGACTTTTTGAGCAAGTGCCTGAAGAGGGACCCAGGAGAAAGGTGGTCAGCCAGTGAACTGCTTAAGCATGATTTCATTACC GAGGAGCCAAATTCTGCTTTGAAGGAGATTATTAGCAGCACAAATGTGGACACTCCAACATGTGTACTGGATCAAGTCTTATGGGACTCGATAGAGGAGT TAGAGACAACTTGGGATTTGTCCCAAGAAAGCCCTTCGGTCTCTCCAGTTGAAAGAATCAAGCAATTGACTGAAGGCAATGGAGAAGTGCCCAATTGGTC ATGGGATGATACTTGGATCACAGTAAGAAGCAACGAACAAGAAATGGTTCCTTGTAGTGAGGATTATAACTTAGCATATGCTAGTGGCCACATTGGCCAT AGTGGGGCAGAGATAACTTGGGCTAGCATGGAATATGACTTTGTCTTTTTTCTTAATGAACTCACGTATATTAGTGGGAATAAGACTAGCAGTAGTGGTA GTTGTGGCGATGGTAGCAGGCATAAAATATTATTGATGCCCTGTGAATGTAGAGAAGGTGCTTTATGTGGCTGTTCAAATTTTTTGAAGGAAATAAACTT CGGTTTTCTACATGGCAATGCTTGCACATGGTTGTTTAAAAATACATATTTCCTCATAAATCACAGTTGTTAA
AA sequence Show only first row Show all	>Potri.011G007400.1 pacid=42781470 polypeptide=Potri.011G007400.1.p locus=Potri.011G007400 ID=Potri.011G007400.1.v4.1 annot-version=v4.1 MCCVCVYIYIEYNYQCKQFSKHNTHSLNFVTPPTFLSKMDWTRGQTIGHGSSATVSMAKANRSGQVFAVKSAELLKSESLQREQSILSTLKCPQIVVYKG CDITNENGKLFYNLFLEYISGGTLIDAIREGGGCLDEAMIRLYARTILLGLEYLHCNGIVHCDIKGHNILVTGDGAKIADLGCAKRVDEVSGDTALKTTA PIAGTPLYMAPEVARGEHQGFPADIWSVGCTVVEMATGQAPWVNVSDPVSALYQIGFSGNVPEIPSFMSKQAKDFLSKCLKRDPGERWSASELLKHDFIT EEPNSALKEIISSTNVDTPTCVLDQVLWDSIEELETTWDLSQESPSVSPVERIKQLTEGNGEVPNWSWDDTWITVRSNEQEMVPCSEDYNLAYASGHIGH SGAEITWASMEYDFVFFLNELTYISGNKTSSSGSCGDGSRHKILLMPCECREGALCGCSNFLKEINFGFLHGNACTWLFKNTYFLINHSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.011G007400 [exp]	0	1
AT1G20925			Auxin efflux carrier family pr...		Potri.002G003500 [exp]	13.07	0.6515
					Potri.001G000450 [exp]	26.15	0.6578
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Potri.016G073000 [exp]	28.28	0.6381
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	28.56	0.6706	Pt-XF1.2
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.001G086400 [exp]	56.48	0.6614	Pt-DOF4.2
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.004G007700 [exp]	74.29	0.5527
AT5G13500			unknown protein		Potri.009G070000 [exp]	74.39	0.5807
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.006G068500 [exp]	81.53	0.5439
AT2G16250			Leucine-rich repeat protein ki...		Potri.004G155100 [exp]	84.48	0.5626
AT3G46450			SEC14 cytosolic factor family ...		Potri.001G237400 [exp]	99.91	0.5872

Compare expression of checked genes

Potri.011G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.