Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-WRKY42.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62300 391 / 1e-129 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G22070 374 / 3e-123 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT4G04450 371 / 3e-122 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G01720 187 / 1e-52 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT5G15130 166 / 1e-44 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G18860 160 / 1e-42 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT1G68150 152 / 5e-41 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G69810 140 / 1e-36 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT5G07100 100 / 5e-24 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G38470 105 / 9e-24 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G007500 [exp] 749 / 0 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.014G155100 [exp] 372 / 4e-121 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.002G228400 [exp] 333 / 1e-106 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.014G111900 [exp] 254 / 2e-77 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 221 / 5e-65 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.015G064100 [exp] 166 / 8e-44 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.017G079500 [exp] 163 / 2e-43 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 157 / 2e-41 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.013G153400 [exp] 111 / 1e-25 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035286 [exp] 263 / 3e-80 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10022959 [exp] 252 / 5e-76 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10015546 [exp] 241 / 3e-74 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10021554 [exp] 225 / 8e-66 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10038028 [exp] 194 / 1e-55 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10030040 [exp] 195 / 2e-54 AT1G62300 224 / 2e-96 WRKY family transcription factor (.1) Lus10035971 [exp] 157 / 4e-42 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10023615 [exp] 153 / 8e-40 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10024246 [exp] 154 / 3e-39 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10037205 [exp] 145 / 2e-37 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G007800.1 pacid=42782011 polypeptide=Potri.011G007800.1.p locus=Potri.011G007800 ID=Potri.011G007800.1.v4.1 annot-version=v4.1 ATGGACAAAGGATGGGGTCTAACCCTCGCTTCTGATCCTGTTTCTGTCTTCTCTAGCAACAACAACAACAGCCCAGTTGGCTCTTTTTTGAAGATCAAAA GAGACTTCATTAGTGATCATAACATGGATCATTCTAGGAACAATAATATGTTTCAGTTTCCAGGTAGTCTTTCTGCTGGCCAAGATGAGCAACCACCTTC TGCTGCTCACGAAGTAGATTTCTTTAAAGAAAGGATAGATAAGGTTGGTGACGATGATTCTAAGACCACAAGTGTTATTGTCAAGAAGGAGAATTCCATT GCTGAACTTGCTCCAAGGTCTACCAGGACTGCTCTTGATGTAAATACTGGGTTGCACCTTCTTACTGCTAACTCTAGAAGTGATCAATCAACTGTGGATG ATGGAGTTTCATCTGATGTTGATGATAAGAGATCAAAGAACAACGAGAAGTTGGCACAATTACAAATGGAGCTGCAAAAAATGAATACAGAAAATCAAAG GTTAAAAGACATGCTTGGTCAAGTAACCACCAGTTACAGTGCTTTACAGATGCATTTTGCAGCACTAATGCAGCAACATCAACAACAAAATCATGGAAAA GAAAGCAATAAAGAGCAACAGAATTTTCAGGGAAAATCTTCTGAGGAAAAGAAACATGAGGACGTAGTAGTGCCCAGACAATTCATGGATCTAGGCCCTT CAGCTGAGACTGATGAACTATCCAATTCATCGTCCGATGAGAGGACTCGTTCTGGAACACCTCAAAACCATATTGAAGTTGCATCCCCGAAAAACAATGG TAAACTTCCATATGATCAAGAAAATTCTAGCTTCCGAGATGGAAAAAGAATTGGCAGGGAAGAGAGTCCTGAATCTGAATCACAAGCATGGAAGGTTCAG AAAACGGATCCTGCCAGTCCTGCTAATAAGGCTATAGAGCAATCGACCGAGGCGACGATGAGAAAAGCCCGTGTGTCGGTTCGTGCACGATCGGAAGCTC CCATGATTACTGATGGCTGCCAATGGCGGAAATACGGCCAGAAGATGGCCAAAGGAAACCCGTGTCCGAGGGCTTATTATCGGTGCACCATGGCAGTGGG CTGTCCAGTTCGAAAACAAGTTCAACGTTGCGCGGAGGATAGAACAATCTTGATCACAACTTATGAAGGGAATCACAATCACCCTCTACCTCCAGCTGCA ATGGCAATGGCATCAACAACAGCAGCAGCTGCAAGCATGTTACTATCAGGATCAATGTCAAGTGCAGATGGCATAATGAACCCAAATTTGCTAGCAAGAG CAATACTCCCAGCTGGCTCATCAAATATGGCAACTATTTCAGCTTCAGCTCCATTCCCTACTGTAACATTAGACCTCACTCATAATCCAAACCCTCTACA GTTCCAAAGACCTCCTCCACAATTCCAAGTCCCTTTTCCAGGCCAGCCCCAGAATTTTTCCTCAGTCACAACACCACAATTGCCTCAGGTTTTTGGTCAA GCCTTGTACAACCAATCGAAATTCTCTGGCCTACAATTGTCTCAGGAAATTGGGACTCCACAATTAGGCCACCAAGCTCAACCCCACTTGTTGCACTCAG GACAACAACCTTCCCTATCTCAGGACACATTGAGTGCTGCCACTGCCGCCATCACGGCCGATCCTAACTTCACTGCAGCACTTGCAGCTGCCATCAGCTC CATCATTGGTGGTGCTAACAGCAACACCACCAACAACAACAATAACAGCAATGCCACGAACAACACAAGCCACAGAAATTAA
AA sequence Show only first row Show all	>Potri.011G007800.1 pacid=42782011 polypeptide=Potri.011G007800.1.p locus=Potri.011G007800 ID=Potri.011G007800.1.v4.1 annot-version=v4.1 MDKGWGLTLASDPVSVFSSNNNNSPVGSFLKIKRDFISDHNMDHSRNNNMFQFPGSLSAGQDEQPPSAAHEVDFFKERIDKVGDDDSKTTSVIVKKENSI AELAPRSTRTALDVNTGLHLLTANSRSDQSTVDDGVSSDVDDKRSKNNEKLAQLQMELQKMNTENQRLKDMLGQVTTSYSALQMHFAALMQQHQQQNHGK ESNKEQQNFQGKSSEEKKHEDVVVPRQFMDLGPSAETDELSNSSSDERTRSGTPQNHIEVASPKNNGKLPYDQENSSFRDGKRIGREESPESESQAWKVQ KTDPASPANKAIEQSTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAA MAMASTTAAAASMLLSGSMSSADGIMNPNLLARAILPAGSSNMATISASAPFPTVTLDLTHNPNPLQFQRPPPQFQVPFPGQPQNFSSVTTPQLPQVFGQ ALYNQSKFSGLQLSQEIGTPQLGHQAQPHLLHSGQQPSLSQDTLSAATAAITADPNFTAALAAAISSIIGGANSNTTNNNNNSNATNNTSHRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.011G007800 [exp]	0	1	Pt-WRKY42.1
					Potri.019G017600 [exp]	2.23	0.9781
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.001G080900 [exp]	3.46	0.9755
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.015G045300 [exp]	5.19	0.9768
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.012G054900 [exp]	6.00	0.9775	CBP60.6
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Potri.013G103300 [exp]	6.32	0.9744
AT4G19950			unknown protein		Potri.005G186200 [exp]	8.66	0.9634	ORF.5
					Potri.012G124666 [exp]	8.66	0.9571
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	10.48	0.9675
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	10.90	0.9625
AT5G51160			Ankyrin repeat family protein ...		Potri.006G223800 [exp]	11.13	0.9555

Compare expression of checked genes

Potri.011G007800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.