Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22080 540 / 0 RHS14 root hair specific 14 (.1) AT1G11920 533 / 0 Pectin lyase-like superfamily protein (.1) AT4G22090 530 / 0 Pectin lyase-like superfamily protein (.1) AT1G30350 431 / 4e-151 Pectin lyase-like superfamily protein (.1) AT3G27400 412 / 1e-142 Pectin lyase-like superfamily protein (.1) AT3G24230 410 / 2e-141 Pectate lyase family protein (.1) AT4G13710 400 / 3e-137 Pectin lyase-like superfamily protein (.1.2) AT5G63180 398 / 4e-137 Pectin lyase-like superfamily protein (.1) AT1G67750 397 / 9e-137 Pectate lyase family protein (.1) AT3G07010 395 / 4e-136 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G007300 [exp] 576 / 0 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.011G008100 [exp] 573 / 0 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.001G339500 [exp] 412 / 6e-143 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 404 / 1e-139 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 400 / 4e-138 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 399 / 2e-137 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G051800 [exp] 398 / 8e-137 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.011G093400 [exp] 391 / 1e-134 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 385 / 1e-131 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011258 [exp] 553 / 0 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 543 / 0 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 533 / 0 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018429 [exp] 427 / 9e-148 AT1G11920 437 / 8e-152 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 418 / 4e-145 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 418 / 4e-145 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 406 / 6e-140 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 404 / 1e-139 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 404 / 2e-139 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 402 / 9e-139 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.011G008000.1 pacid=42781482 polypeptide=Potri.011G008000.1.p locus=Potri.011G008000 ID=Potri.011G008000.1.v4.1 annot-version=v4.1 ATGGCCTCACCAGCCCCTCTAATATTGCTTGCATTTCTTGTACCATACTTATGTTTAACCCTACCAGCTTATGCACTAGATTACAAGCATTATAAACCCT TATCAAGCTATCTTCCAAGCAATATTAAGAAAACTCTTAACACTATAGACTCATGCTGGCGTGCCCAATCAAATTGGGCCAACAATCGTCGTGCCTTGGC CGATTGCGCCGTAGGGTTTGGCAGAGGCGCGATGGGAGGGAAATATGGGGCGATATACGTCGTTACTACACCGAATGATGATCCTGTCAACCCTAAACCG GGCATGCTTCGGTATGGTGCTATCCAAAGTAAACCTCTTTGGATCGTTTTTGCCAAGGATATGGTAATCACACTTAGAAATGAGCTTATAATGAATAGTT ATAAGACTATAGATGGGAGGGGAGCTAAAGTAGAGATTGCATATGGACCGTGCATAACAATTCAAGGTGTTAGCCATGTTATTATTCATGGGATTAGTAT TCATGATTGCAAACCAGGGAAATCTGGTAGAGTTATTAGCACTCCTACGCACGTTGGGAAGCGTGGAGGCTCCGATGGAGATGCCATTGCCATCTTTGCA TCTTCAAACGTTTGGATTGACCATTGCTATCTTGCTCGTTGCACCGATGGCCTAATTGATGTAATTCATGCTTCAACCTCCATCACAATCTCTAACAATT ACTTCTCCCAGCATGACAAGGTGATGTTGCTTGGACACAATGATGGATATACAGCAGATAAAGTTATGAAAGTAACTATAGCTTTCAACCGTTTTGGCTC TGGACTTATTGAGAGGATGCCAAGGGTAAGGTTTGGCTATGCTCATGTTGCTAACAATAGATATGATGAGTGGCAAATGTACGCGATTGGTGGCAGTGCT AATCCAACCATCTTTAGTGAAGGAAACTACTTTTTAGCTCGTAATGGTAATTCCAAGCAGGTTACTAAGAGAGAGGCCAAGAATGGCTGGACGAATTGGA AATGGAGATCATCTAAGGATGTATTTATGAATGGTGCTTATTTTGTACAATCTGGATATGGAAGTTGTGCGCCACTTTATTCTAAAACCCAGTCCTTTAC GGTGGCTCCTGGGTCCTTGGTTCCTGCTTTAACATCTGGTGCAGGTCCTCTAAACTGTTTTAGGGGTCAACCATGTTGA
AA sequence Show only first row Show all	>Potri.011G008000.1 pacid=42781482 polypeptide=Potri.011G008000.1.p locus=Potri.011G008000 ID=Potri.011G008000.1.v4.1 annot-version=v4.1 MASPAPLILLAFLVPYLCLTLPAYALDYKHYKPLSSYLPSNIKKTLNTIDSCWRAQSNWANNRRALADCAVGFGRGAMGGKYGAIYVVTTPNDDPVNPKP GMLRYGAIQSKPLWIVFAKDMVITLRNELIMNSYKTIDGRGAKVEIAYGPCITIQGVSHVIIHGISIHDCKPGKSGRVISTPTHVGKRGGSDGDAIAIFA SSNVWIDHCYLARCTDGLIDVIHASTSITISNNYFSQHDKVMLLGHNDGYTADKVMKVTIAFNRFGSGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSA NPTIFSEGNYFLARNGNSKQVTKREAKNGWTNWKWRSSKDVFMNGAYFVQSGYGSCAPLYSKTQSFTVAPGSLVPALTSGAGPLNCFRGQPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.011G008000 [exp]	0	1
AT1G14540			Peroxidase superfamily protein...		Potri.001G458900 [exp]	3.74	0.6193
					Potri.008G053150 [exp]	27.71	0.6079
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	30.65	0.5568
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.006G236100 [exp]	48.00	0.6079
AT3G19920			unknown protein		Potri.007G073600 [exp]	49.95	0.6079
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.014G118300 [exp]	62.48	0.5760
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	64.29	0.5431
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.014G030900 [exp]	68.01	0.5619
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Potri.010G044500 [exp]	72.69	0.5299
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Potri.005G138900 [exp]	78.99	0.5060

Compare expression of checked genes

Potri.011G008000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.