Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22080 504 / 2e-179 RHS14 root hair specific 14 (.1) AT4G22090 492 / 1e-174 Pectin lyase-like superfamily protein (.1) AT1G11920 481 / 2e-170 Pectin lyase-like superfamily protein (.1) AT1G30350 408 / 6e-142 Pectin lyase-like superfamily protein (.1) AT3G27400 394 / 1e-135 Pectin lyase-like superfamily protein (.1) AT4G13710 386 / 1e-131 Pectin lyase-like superfamily protein (.1.2) AT3G07010 377 / 9e-129 Pectin lyase-like superfamily protein (.1) AT3G24230 377 / 1e-128 Pectate lyase family protein (.1) AT1G67750 374 / 7e-128 Pectate lyase family protein (.1) AT4G24780 372 / 5e-127 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G007300 [exp] 625 / 0 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.011G008000 [exp] 549 / 0 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.001G339500 [exp] 377 / 4e-129 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.012G091500 [exp] 372 / 3e-127 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 370 / 5e-126 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G051800 [exp] 370 / 1e-125 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.008G182200 [exp] 366 / 6e-125 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.003G175900 [exp] 367 / 1e-124 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 366 / 5e-124 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011258 [exp] 501 / 6e-178 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 488 / 8e-173 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 483 / 1e-170 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 379 / 5e-130 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 376 / 3e-128 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011400 [exp] 375 / 3e-128 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10033037 [exp] 375 / 4e-128 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 375 / 4e-128 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 374 / 1e-127 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 373 / 1e-127 AT1G67750 625 / 0.0 Pectate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.011G008100.1 pacid=42780955 polypeptide=Potri.011G008100.1.p locus=Potri.011G008100 ID=Potri.011G008100.1.v4.1 annot-version=v4.1 ATGGCCTCACTAGCATATGTCCTATTGCTTTCATTTCTTGCCACACTCTTTGCTTCAACCTTGCAAGATGATTCACTCGAATACAAGCCTAAACCCTTAT CAAGCTATCTTCCAAGCAATTATAAGAAAGTCTTGAACACCATAGACTCATGCTGGCGCACGGAGTCCAACTGGGCTACCGATCGTCGTGCATTGGCTGA TTGTGCTGTGGGATTTGGCCAAGCTGCAATCGGAGGGAAATATGGGAAAACATACGTTGTCACCACCCCAGATGACGATCCTACCGATCCGAAACCAGGC ACACTTCGGTATGGTGCTATCCAAACTGAGCCTCTTTGGATCATTTTTGACAAAGACATGGTGATTAAACTTGAAAATGAGCTTATGATAAATAGTTTCA AGACTATAGATGGAAGAGGGTCTAATGTAGAGATTACAGATGGACCATGCCTAAAAATTGAAGGTGTTAGTCATGTTATCATACATGGGATTAGCATTCA TGACTGTAAGCCAGGGAAACGGGGGCTTGTCAGGAGTAGTCCGACGCATGTTGGCCAACGCCGCGGTGCTGACGGAGATGCCATTTCCATTTTTGCATCT TCTCATATTTGGATTGACCATTGCTATCTTGCTCGTTGCATCGATGGCCTAATTGATGTAATCCATGCTTCTACTGCGGTCACCATATCCAACAACTATT TCGCTCAGCATGATAAGGTGATGTTGCTTGGACATAATGATGAATATACTGCTGATAAAGTTATGAAAGTAACAGTTGCCTTCAATCATTTTGGCCCTGG ACTCATTGAAAGAATGCCAAGAGTAAGGTTTGGCTATGCTCATGTTGCCAACAATAGATATGATGAATGGCAAATGTATGCCATTGGCGGTAGTGCTGGT TCAACCATATTTAGTGAAGGGAACTACTTTATAGCTCCTGATATTTCCTACGCCAAGGAGGTTACAAAAAGAGAGGCTGATGGTGGCTGGAAGAATTGGA AATGGAGGTCATCATCCAAGGATGTATTTATGAATGGTGCTTACTTTGTTCCATCTGGATATGGAAGTTGTGCTCCACTCTATTCCGAAGCTCAGTCCTT TGTAGTTTTCCCAGGAACTATGGTTCCTTCTTTAACATCTGATGCAGGCCCCTTAACCTGTGTTGTTGGACATGCTTGTTGA
AA sequence Show only first row Show all	>Potri.011G008100.1 pacid=42780955 polypeptide=Potri.011G008100.1.p locus=Potri.011G008100 ID=Potri.011G008100.1.v4.1 annot-version=v4.1 MASLAYVLLLSFLATLFASTLQDDSLEYKPKPLSSYLPSNYKKVLNTIDSCWRTESNWATDRRALADCAVGFGQAAIGGKYGKTYVVTTPDDDPTDPKPG TLRYGAIQTEPLWIIFDKDMVIKLENELMINSFKTIDGRGSNVEITDGPCLKIEGVSHVIIHGISIHDCKPGKRGLVRSSPTHVGQRRGADGDAISIFAS SHIWIDHCYLARCIDGLIDVIHASTAVTISNNYFAQHDKVMLLGHNDEYTADKVMKVTVAFNHFGPGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSAG STIFSEGNYFIAPDISYAKEVTKREADGGWKNWKWRSSSKDVFMNGAYFVPSGYGSCAPLYSEAQSFVVFPGTMVPSLTSDAGPLTCVVGHAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.011G008100 [exp]	0	1
AT1G53520			Chalcone-flavanone isomerase f...		Potri.001G380700 [exp]	1.00	0.9868
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G055600 [exp]	1.41	0.9416
					Potri.014G144000 [exp]	23.23	0.7772
AT1G22240		APUM8	pumilio 8 (.1)		Potri.011G144000 [exp]	23.79	0.7664
AT5G16100			unknown protein		Potri.006G223100 [exp]	33.68	0.9089
					Potri.001G276804 [exp]	42.70	0.9087
					Potri.001G330250 [exp]	45.29	0.9087
					Potri.001G466250 [exp]	47.74	0.9087
AT4G05230			Ubiquitin-like superfamily pro...		Potri.004G022400 [exp]	50.07	0.9087
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160200 [exp]	52.30	0.9087

Compare expression of checked genes

Potri.011G008100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.