Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 44 / 0.0002 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008420 [exp] 632 / 0 AT5G36930 265 / 1e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G077260 [exp] 374 / 3e-123 AT5G36930 195 / 8e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008164 [exp] 372 / 2e-118 AT5G36930 491 / 3e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G283100 [exp] 350 / 2e-117 AT5G40100 57 / 3e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.011G012750 [exp] 356 / 1e-116 AT5G36930 195 / 3e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 362 / 8e-115 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G269900 [exp] 352 / 1e-113 AT5G36930 284 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G270000 [exp] 346 / 1e-108 AT5G36930 496 / 1e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 343 / 1e-107 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G008676.1 pacid=42782209 polypeptide=Potri.011G008676.1.p locus=Potri.011G008676 ID=Potri.011G008676.1.v4.1 annot-version=v4.1 ATGGAGTTAGAGCATCATCAGGGACACAGGTTGCTTCAAAGTGATGGATTTGTTGCTAGTACATCATACATTTCAACTTTGTCGTTGAAGCTATTGTTTC CCTCTAGGTTTTCAGCAAGGAAAACTTCGAGATTTACATTGCCACACTCCTTGACGAGACTAGATTTAAGTGGAACTCCTATTCGTTTTCTTCCAGAAAG CATTAAGGACCTCAGTCCACTCATAGCCCTGATTTTAAGAAATTGCAAAATGCTTCAGACCCTCCCAGAGCTTCCATCCAATTTGTCTTCGTTAGACGTG TCTAGTAGTTATTCACTGCAAACAGTTCCAAATCTAATCCCTTGGACTGTAGTATATGATTGTGATCAATTAGTTGACATCCAAGATTCGATGAAGCTAG AATTAATCCAAAAGGCTGACTCACACATGTTCAGAATAATGGAAACGGTCAACGCTCAAATACAGCCCTGGTTATTTCAGGTAACAGTTTTTAAGGGCGT ATTCAACGTTGTCGTAGCTGATGAAGATGGGATGTTTAAGTTTTATGAGGAGGAAGAAGAGGAGTGGATAATTCAGAAAGAGTTTGTGGGCTGCCTGTCA TTCCAAATAGCCCCACCTGCTGTGCACCGGATATGTGGTTTTAACCTATTCACAACGTTTTGTACCACGTCAGAAACCCTTCTCTGTGGTTCTGTTTATC TCGAAATCAGAAACAATACCAGTGGTCAATCCTTGTTTTGTCCCGCCTCTCTCTTTCCTAGTGGCTACAAGCACAGGAATGTTGTATTCCAATCGCTAAG CCACTGGAAATTAGGGGGCGATGATCCTACATTTGATAATGGTGATGACGTGAGTATTTCAGTGCTTCCACTTGATCCAACTATTCAAATAATGATGGTT GGTGTCCTATGGTTGCATGAAGAGGAAGGAAATGGTGATGATGATGATATCCAATCAAAGAATAAAGTTATCACATCCCAAAGTAGTAGCTCATCATACA GGGAAGTTATCACAACCCACAACAGTAGCGGCGATGATGATGATGATGATGATGATGATGTACATCTAGCCAATGTAGAAACAGCTTCTCATATTTTTAG GAATTATTCCTGTGCTGCGCGTTATAATCCTGGCAACTTGGAAGTATGTTCGTGGTTATTTGAAAAGAAAGAAAAAAGGAGGCATCTTTTTTTTATCAAT TATCGTGGGTATCCGGGCCAGCTTGCGCGCACCTCGATTAATCCCACAGGCCCTGAAGTTAACGACCATGTAAGCCTCCAGTAG
AA sequence Show only first row Show all	>Potri.011G008676.1 pacid=42782209 polypeptide=Potri.011G008676.1.p locus=Potri.011G008676 ID=Potri.011G008676.1.v4.1 annot-version=v4.1 MELEHHQGHRLLQSDGFVASTSYISTLSLKLLFPSRFSARKTSRFTLPHSLTRLDLSGTPIRFLPESIKDLSPLIALILRNCKMLQTLPELPSNLSSLDV SSSYSLQTVPNLIPWTVVYDCDQLVDIQDSMKLELIQKADSHMFRIMETVNAQIQPWLFQVTVFKGVFNVVVADEDGMFKFYEEEEEEWIIQKEFVGCLS FQIAPPAVHRICGFNLFTTFCTTSETLLCGSVYLEIRNNTSGQSLFCPASLFPSGYKHRNVVFQSLSHWKLGGDDPTFDNGDDVSISVLPLDPTIQIMMV GVLWLHEEEGNGDDDDIQSKNKVITSQSSSSSYREVITTHNSSGDDDDDDDDDVHLANVETASHIFRNYSCAARYNPGNLEVCSWLFEKKEKRRHLFFIN YRGYPGQLARTSINPTGPEVNDHVSLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.011G008676 [exp]	0	1
AT2G24370			Protein kinase protein with ad...		Potri.011G008356 [exp]	1.41	0.9210
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.015G117350 [exp]	2.44	0.8431
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G013200 [exp]	3.00	0.7909
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.015G143950 [exp]	5.47	0.8000
					Potri.001G443025 [exp]	20.78	0.7671
AT4G26020			unknown protein		Potri.018G141166 [exp]	23.49	0.7648
AT5G18420			unknown protein		Potri.004G092400 [exp]	26.98	0.7706
AT5G36930			Disease resistance protein (TI...		Potri.013G037599 [exp]	27.36	0.7148
AT5G05390		LAC12	laccase 12 (.1)		Potri.008G073800 [exp]	32.86	0.7284	LAC90b
AT2G42005			Transmembrane amino acid trans...		Potri.004G206800 [exp]	33.00	0.7508

Compare expression of checked genes

Potri.011G008676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.