Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04350 1442 / 0 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G14610 95 / 1e-19 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT5G49030 81 / 3e-15 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT5G16715 67 / 5e-11 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT4G10320 59 / 2e-08 tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G09620 55 / 4e-07 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087850 [exp] 94 / 2e-19 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.007G004100 [exp] 92 / 8e-19 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.010G014500 [exp] 81 / 3e-15 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G033200 [exp] 70 / 7e-12 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 70 / 7e-12 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.017G124500 [exp] 69 / 1e-11 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.004G226700 [exp] 54 / 9e-07 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.003G003900 [exp] 53 / 1e-06 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015552 [exp] 1375 / 0 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10020041 [exp] 159 / 3e-44 AT4G04350 171 / 7e-49 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10020034 [exp] 105 / 6e-26 AT4G04350 102 / 1e-25 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10034788 [exp] 90 / 5e-18 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10033331 [exp] 90 / 8e-18 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10024041 [exp] 70 / 1e-11 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 69 / 1e-11 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10028505 [exp] 66 / 1e-10 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10043413 [exp] 54 / 7e-07 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10034171 [exp] 50 / 1e-05 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00133 [poplar] [flax] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [poplar] [flax] DALR PF08264 [poplar] [flax] Anticodon_1 Anticodon-binding domain of tRNA ligase CL0039 [poplar] [flax] HUP PF09334 [poplar] [flax] tRNA-synt_1g tRNA synthetases class I (M)
Representative CDS sequence Show only first row Show all	>Potri.011G009600.2 pacid=42781682 polypeptide=Potri.011G009600.2.p locus=Potri.011G009600 ID=Potri.011G009600.2.v4.1 annot-version=v4.1 ATGAATGTAAACACTTGTATTCAACCGCCCCAGTTCCTTCCATTATCTCCTTTTTATCAGCAAAGGTTTCATCTTTTCACTCAAAAGCCTCAATCTTTGA AGCCCACCAAGAAAAGTTGTTATTTTTCCACTACAGCGTGTGACAACAGCTTCAAAGGTGGCCTTTTTAGGGTTCAAAAGGGTAGAATCAGATGCTCAGT TAGTGAAGTTGAAGAGCAGAAGGAGAAGCAGCTGCAAGTGGTGAAGAGAGCTTATCCTTTCCATGAAATTGAGCCTAAATGGCAGAGTTACTGGGAAAAA AATCAAACTTTTAGAACCCCAGATGAAGTTGATACCTCTAAGCCTAAATTCTATGTGCTTGACATGTTTCCTTATCCCAGTGGCGCTGGGTTACATGTTG GTCATCCATTGGGATATACTGCTACAGATATTCTTGCTAGACTCAAACGTATGCAAGGTTACAATGTTTTGCACCCAATGGGATGGGATGCATTTGGTTT GCCTGCTGAGCAATATGCAATTGAGACAGGAACTCATCCGAAAATCACAACATTGAGGAACATTAACCGCTTCCGTTCCCAGCTTAAATCACTGGGATTA TCTTATGACTGGGATCGTGAAATCTCTACTACAGAACCACAATATTATAAATGGACCCAATGGATCTTTCTTCAGCTATTGAAGAGAGGGTTGGCATATC AGGCTGAGGTACCAGTCAATTGGTGCCCTGCTCTTGGCACTGTTTTGGCAAATGAGGAGGTGGTTGATGGAGTAAGTGAGCGTGGGGGTCACCCAGTTAT CAGAAAGCCAATGAGGCAATGGATGCTTAAGATTACTGCATATGCTGATCGCCTTCTTGAAGACTTAGATGACCTCGATTGGCCTGAAAGCGTAAAAGAA ATGCAGAGGAACTGGATAGGAAGGTCTGAAGGGGCTGAGCTGGAATTTTGTGTTCTCGATGGTGATGGAAAGGAAAGAGACATAAAGATTACTGTTTATA CTACCAGGCCCGACACTGTCTTTGGAGCAACATATTTAGTTGTGGCACCAGAACATTCATTGCTTCCATCATTGATGTCTCTTTCACAGAGAGAAAGTGT GGAAGAGTACAAAGATCTAGCTTCACGAAAAAGTGACCTTGAGAGGACTGAGCTTCAGAAGGAGAAAACTGGGGTTTTCAGTGGCTGCTATGCACAAAAT CCAGCAAATGGGGAAGCAATTCCAATATGGGTTGCAGATTATGTTTTGGGGAGTTATGGGACTGGAGCTATTATGGCAGTGCCTGCTCATGACACTCGTG ACTATGAATTTGCTACTAAATATGACATTCCCATTCGTTGGGTTGTGAAGCCAGATGATGATGATTTTAGTGATTCAGGAAAGGCTTATGAAAGAGAAGG CTCCATTCTCAATTCATCAAGTTCAACATCAGGGCTTGACATCAATGGCTTGCATAGCAAAGTAGCAGCATCTAAAGTCATTGAATGGGCTGATACAACT GGAAATGGGAAGAAAAAGGTGAACTACAAGTTGAGGGATTGGCTTTTTGCTCGACAGCGTTATTGGGGGGAGCCTATCCCAGTTGTTTTCTTGCAGGATA CTGGTGAGACTGCTCCAATTCTTGAAACTGACCTGCCCCTTACACTCCCTGAATTAGATGATTTTACCCCCACGGGGACAGGAGAGCCACCCCTTGCAAA AGCTGTTTCTTGGGTTAAAACCACTGATCCTTCATCTGGAAAACCTGCCATGAGAGAAACAAGTACCATGCCCCAATGGGCTGGTTCTTGCTGGTACTAT CTGAGATATATGGACCCAAAAAACTCCAAAGAATTAGTTGACAAGACAAAAGAAAAGTACTGGAGTCCAATTGATGTCTATGTTGGTGGTGCTGAGCATG CTGTTCTCCATTTACTTTATTCAAGATTCTGGCACAAGGTTCTTTATGACATTGGTGTTGTGTCAACCAAAGAACCCTTCAAGTGCGTCATTAACCAGGG AATCATCCTTGGGGAAGTCCAATACACGGCCTTCAAAAACCCAGATGGAAACTATGTATCTGCAGACTCTGCTGATTTGTCAGGTGAAATTAATCAGGAA ATCATTCCCGAGGAAAAGGTTATAAAATCCGGGGATTCCTTTGTACTGAAAGGTGATCCTAGTATCCGATTGATAGCTCGTGCACATAAAATGAGTAAAA GTAGGGGAAATGTTGTGAATCCAGATGATGTTGTCTCTGAGTATGGAGCAGATTCTCTTAGGTTGTATGAAATGTTCATGGGTCCATTTAGAGACTCAAA AACATGGAGTACTAGTGGGATTGAAGGCGTCTATCGATTTTTGGGACGAACTTGGAGGCTAATTGTTGGCTCACCTTTACCTGATGGAACTTTCAGAGAT GGAACAGTGGCAATCGATGGGGAGCCATCTTTTGAACAGTTACGCACCCTGCATAAATGCATAGCAAAGGTAACGGAGGAAATTGAAGGGACAAGGTTCA ACACTGGAATTTCTGCAATGATGGAGTTCATTAATGCTGCATACAAGTGGGATAAACTTCCAAGATCAATTATCAAGGAATTTGTCTTCTTGCTATCACC TTATGCACCTCACATGGCTGAGGAGCTTTGGTTTCGCCTTGGGCATTCGAATTCGTTGGCATACGAGCCCTTTCCTAAGGCAAATCCTGATTACCTGAAG GAGTCTACCATAGTTCTTCCAGTTCAGATCAATGGCAAGATGAGGGGTACCATACAGATTGAAGAAGGATGTTCAGAGGAGGATGCTTTCAGATTAGTTT CACAGGATGCGAAACTCTCCAAGTTCCTGGATGGAAAATCTATCAAGAAAAGAATCTACGTTCCTGGGAAAATTTTAAATGTTATTTTGGGTCCTCAAAA CATCAAGGCAGGAGTCCGGTAG
AA sequence Show only first row Show all	>Potri.011G009600.2 pacid=42781682 polypeptide=Potri.011G009600.2.p locus=Potri.011G009600 ID=Potri.011G009600.2.v4.1 annot-version=v4.1 MNVNTCIQPPQFLPLSPFYQQRFHLFTQKPQSLKPTKKSCYFSTTACDNSFKGGLFRVQKGRIRCSVSEVEEQKEKQLQVVKRAYPFHEIEPKWQSYWEK NQTFRTPDEVDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRSQLKSLGL SYDWDREISTTEPQYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESVKE MQRNWIGRSEGAELEFCVLDGDGKERDIKITVYTTRPDTVFGATYLVVAPEHSLLPSLMSLSQRESVEEYKDLASRKSDLERTELQKEKTGVFSGCYAQN PANGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDYEFATKYDIPIRWVVKPDDDDFSDSGKAYEREGSILNSSSSTSGLDINGLHSKVAASKVIEWADTT GNGKKKVNYKLRDWLFARQRYWGEPIPVVFLQDTGETAPILETDLPLTLPELDDFTPTGTGEPPLAKAVSWVKTTDPSSGKPAMRETSTMPQWAGSCWYY LRYMDPKNSKELVDKTKEKYWSPIDVYVGGAEHAVLHLLYSRFWHKVLYDIGVVSTKEPFKCVINQGIILGEVQYTAFKNPDGNYVSADSADLSGEINQE IIPEEKVIKSGDSFVLKGDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPFRDSKTWSTSGIEGVYRFLGRTWRLIVGSPLPDGTFRD GTVAIDGEPSFEQLRTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWDKLPRSIIKEFVFLLSPYAPHMAEELWFRLGHSNSLAYEPFPKANPDYLK ESTIVLPVQINGKMRGTIQIEEGCSEEDAFRLVSQDAKLSKFLDGKSIKKRIYVPGKILNVILGPQNIKAGVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	0	1
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	2.44	0.9621
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	2.82	0.9517
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	4.00	0.9665
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	4.00	0.9597
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	5.09	0.9470
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	6.32	0.9414
AT5G48830			unknown protein		Potri.002G241200 [exp]	7.34	0.9425
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.013G103600 [exp]	7.34	0.9507
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Potri.010G014500 [exp]	7.74	0.9538
AT1G53250			unknown protein		Potri.011G112300 [exp]	9.43	0.9122

Compare expression of checked genes

Potri.011G009600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.