Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11950 865 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 832 / 0 transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G00990 597 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 498 / 1e-158 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G09060 414 / 3e-128 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 300 / 2e-86 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G006200 [exp] 1649 / 0 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G091200 [exp] 674 / 0 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G082901 [exp] 664 / 0 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.013G019000 [exp] 471 / 5e-149 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G027000 [exp] 411 / 2e-129 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.015G012800 [exp] 434 / 2e-128 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G032700 [exp] 313 / 2e-90 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 287 / 2e-81 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020033 [exp] 924 / 0 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10002391 [exp] 639 / 0 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10015260 [exp] 625 / 0 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10017092 [exp] 471 / 2e-149 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 470 / 4e-149 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10027890 [exp] 416 / 3e-127 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10006741 [exp] 395 / 6e-122 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10025380 [exp] 323 / 8e-96 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 241 / 2e-70 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020084 [exp] 247 / 2e-67 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] PF10497 [poplar] [flax] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Potri.011G009700.4 pacid=42782210 polypeptide=Potri.011G009700.4.p locus=Potri.011G009700 ID=Potri.011G009700.4.v4.1 annot-version=v4.1 ATGGCTGCAATGATTGCTAAGTCTAGGATTAACCGGGATGATGATAATAAAATTAGGAGATTTCAAGGGGCTTCCTTGAATTTTTCATTGCATGAAACAA GGGAAAGAGTTAAGAAGTCCCGGCAAAATAAGTTTAATGAGGTAGTAGCATCTAAGATGAGAAGGAAGATTTCGTGTAAGAAAGTGGAAGTGATTCAATT GTCATCAGATAGTGATGATGATGACTGGTCTCCCCGAAGGAGAAAGAAAGCTCCGAATAGGAAACTTATATTAGCCGCGGAAAGTGAACTTTCAGAGAGT GATGAGGAGTGCTCACCTTCGGAAAGAAGGAACGATTTGTCTGAGAAAATTAAGCCAGCCCCGGAGATTGAATTGTCGAAAAGTGATGACCAGTGGTTTC TTGGAGCAAGAAGGAAAGATTCATCTAAGAAAACTAATCCAGCCCCAGAGATTGAATTGTTGAAAAGTGATGATCATTGGTGTCTGGGAACAAGAAGGAA AGCTTCATCTAATAAAACTAAGCCAGCCTCAGAAATTGAATTAATGAAAAGTGATGATCAACAGTGTCTAGGAACAAGAAGCAAAGCTTCATCTAAGAAA ATTACGTTAACCCCAGATGTTGGATTTTCAGGGAGTAATGGTGAGTTGCCTCAAACAAGAGTCAAAACATCATCTAAGAAAATTAAGTCAACTTCAGAAA TTGAGTTGTCAAATAGTAGTGATGAGTGGTCACCTCGAGCGAGAAGAAAAACTTCATCTAAAAAAGTGAAGCCAGTTACGGAATCTGACTTTTTGGAGAG TAATGGGTTTCCAAAGAGGCAGCAGAATGGTTTAAAAAAGCGTAGCAGAAGCAGTTCTGTAGGTGTAGGTTTTGATGTTGACTCGGAAGAGGATGTGTTG GAAGCAATTTGTCTTGTAAAAATGAGAGAGCGAATAAGAACTAGGATTTCAATTACTGAGATGAACGAGAGGAGTCTGAAGGAGGCCAGAGAAAAAAATA TAGATTCTATGAATTCTTCTTTCTGTGCTTCTTCTTCTTCAGAATCAGCTTCTTCTAGCTTATCAGTTTCAGTTTCAAAACATGATGGTTATAGCAATGG TGTGTCTGCAGCGAGAAATGTGAAGGCCAAAGGACAAGAAATCAAACTATGTCATCAGTGCATGAAAAAAGAAAGAAGAACTGTTGTTGTTTGTAAGAAA TGTGAAAGAATGTACTGCATACAGTGCATCAAGCAATGGTATCCTGAGATGACAGAAGGTCAATTTGCGGAACAATGCCCATTTTGTTGTAAAAAATGCA ATTGCAATGTGTGTTTGCACTCGAGTGGATTGATTAAGACATCCAAAAGGAATATCACCAACCATGAAAAGGTTCGGCATCTGCATTATTTGATCAAGTC ACTACTTCCTTTTCTGGAACAAATCTGTGATGAACAAACTGAAGAAGTTCAGATTGAGGCTGGTATTGGAGATTTCCCTGTTGATATAGCTGAGAACTTT TGCTATAGCAATGAGCGTGTTTATTGCAACTACTGTGCCACTTCCATTGTTGACTTCCATCGCAGCTGTCGAAAATGTGCTTATGAACTATGCCTCAGTT GTTGTCGAGAAATTCGAAAGGGAAGCCTTTCAAGTCGTGCTGAAAAAAGTTTTTGGTATGTGGATAGAGGCTTTGATTATATGCATGGTGGAGATCCACT GCCTTGTCAATACCAAAATCCTTATGACCACAGTGAGTCTCTGGTTCTACCATGGAATGCCAGTGAAGATGGGAGCATTTCTTGCCCTCCACAAGAATTG GGTGGTTGTGGTGATTGTTTATTGGAGCTAAAGCGTATCCTTCCACTGGGATGGGTTGCAGAGTTGAAAAAAAGGGCAGAAGAATTATTGGGAATCTGTG ATACTGAACAGGCAAGTTTGACGTGCAAGTGTAATGAAGCAGGGGAAGGGGTGTTGAGAAGAGCAGCTTTTAGGGAAGGATCTGAGGACAATTACTTGTA TTGTCCTGCTTCAAAGGATATTCTTGAGTATGAACTTTTTCACTTCCAAAAGCACTGGGTTAAAGGTGAGCCAGTTATAGTTCGTGATGTTCTCGAGCAG ACAACTCATTTGAGCTGGGAGCCAAAGGTCATGTGGCGTGCATTATGTGAAAATGTGGATTCACATATTAGTTCAAAAATGTCTGAAGTGAAGGCTATTG ATTGTCTGGCTTGTTGCGAGGTGGAGATCAATACCCGGCAGTTTTTTAAAGGCTACACGGAAGGGAGAACATATCATAACTTTTGGCCTGAAATGCTTAA GCTCAAGGACTGGCCTCCATCAGATAAATTCGAAAATCTTTTGCCACGCCACTGTGACGAGTTTAACAGTGCACTGCCATTTCAAGAATACAGTGATCCA AATGCTGGAATCCTTAATGTTGCTGTGAAGTTTCCAGCAGATCACCTGCAACCAGATTTGGGTCCAAAAACTTACATTGCATATGGTACAAGAGAAGAGC TTGGAAGAGGGGACTCAGTGACCAAGCTTCACTGTGACATGTCAGATGCGGTAAATATTTTGACACATACTGCTGAAGTAGCATTAAGTCAAGAACAGTG CTCCGCCATTGAGCTGTTGAAAATGAAGCACAGGGCTCAGGATGAGAAGGAATATTTAGAACAAGACAAGGTAGACAATCCTCACATTGAACTTGATCAG GGAAATGATAGTTTGAAAGAAGAGATGGGTGTCTCAGAAATTAGAGAGCCACAGAAGCCCCCCTCTGAAATTAATGAACAACTTGAGAACACTGAAGATG TGTTAAGAGGAGCTACACTTTCTGGTTTGCCCTCGGAAGTGGAGACTATGGACAAAACAGGTGGCGCCGCCTTGTGGGACATTTTCAGAAGGGAGGATGT TCCCAAGTTAGAGGAATATTTGAGAAAGCACCACAGAGAATTCAGGCACAATTACTGTGCCCCTGTAGAACGGGTCGTTCATCCAATTCATGACCAATGT TTCTATTTAACTGTGGAGCATAAAAGGAAACTGAAGGAGGAATTCGGAGTTGAAGCCTGGACATTTGAACAAAGAGTTGGAGAGGCTGTATTTATACCTG CTGGATGCCCACACCAAGTAAGGAATCTACAGTCTTGCACAAAAGTTGCTGTCGACTTCGTCTCACCCGAAAATATAAGGGAATGCCTCCGGTTAACTGA AGAGTTTCGACAACTTCCAGTGAACCATAGAGCTAGAGAGGATAAACTAGAGATAAAGAAAATGATAATCTATGCAATAGATAAAGCCATTATAGACTTG CAAGAGCTAACAAAATCACAGCACTGA
AA sequence Show only first row Show all	>Potri.011G009700.4 pacid=42782210 polypeptide=Potri.011G009700.4.p locus=Potri.011G009700 ID=Potri.011G009700.4.v4.1 annot-version=v4.1 MAAMIAKSRINRDDDNKIRRFQGASLNFSLHETRERVKKSRQNKFNEVVASKMRRKISCKKVEVIQLSSDSDDDDWSPRRRKKAPNRKLILAAESELSES DEECSPSERRNDLSEKIKPAPEIELSKSDDQWFLGARRKDSSKKTNPAPEIELLKSDDHWCLGTRRKASSNKTKPASEIELMKSDDQQCLGTRSKASSKK ITLTPDVGFSGSNGELPQTRVKTSSKKIKSTSEIELSNSSDEWSPRARRKTSSKKVKPVTESDFLESNGFPKRQQNGLKKRSRSSSVGVGFDVDSEEDVL EAICLVKMRERIRTRISITEMNERSLKEAREKNIDSMNSSFCASSSSESASSSLSVSVSKHDGYSNGVSAARNVKAKGQEIKLCHQCMKKERRTVVVCKK CERMYCIQCIKQWYPEMTEGQFAEQCPFCCKKCNCNVCLHSSGLIKTSKRNITNHEKVRHLHYLIKSLLPFLEQICDEQTEEVQIEAGIGDFPVDIAENF CYSNERVYCNYCATSIVDFHRSCRKCAYELCLSCCREIRKGSLSSRAEKSFWYVDRGFDYMHGGDPLPCQYQNPYDHSESLVLPWNASEDGSISCPPQEL GGCGDCLLELKRILPLGWVAELKKRAEELLGICDTEQASLTCKCNEAGEGVLRRAAFREGSEDNYLYCPASKDILEYELFHFQKHWVKGEPVIVRDVLEQ TTHLSWEPKVMWRALCENVDSHISSKMSEVKAIDCLACCEVEINTRQFFKGYTEGRTYHNFWPEMLKLKDWPPSDKFENLLPRHCDEFNSALPFQEYSDP NAGILNVAVKFPADHLQPDLGPKTYIAYGTREELGRGDSVTKLHCDMSDAVNILTHTAEVALSQEQCSAIELLKMKHRAQDEKEYLEQDKVDNPHIELDQ GNDSLKEEMGVSEIREPQKPPSEINEQLENTEDVLRGATLSGLPSEVETMDKTGGAALWDIFRREDVPKLEEYLRKHHREFRHNYCAPVERVVHPIHDQC FYLTVEHKRKLKEEFGVEAWTFEQRVGEAVFIPAGCPHQVRNLQSCTKVAVDFVSPENIRECLRLTEEFRQLPVNHRAREDKLEIKKMIIYAIDKAIIDL QELTKSQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11950			Transcription factor jumonji (...		Potri.011G009700 [exp]	0	1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.002G059800 [exp]	2.44	0.8867
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	2.82	0.8896
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G061400 [exp]	5.91	0.8800
AT1G03610			Protein of unknown function (D...		Potri.017G152601 [exp]	6.00	0.8827
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	8.48	0.8843
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	9.74	0.8838
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	16.12	0.8502	RGA.64
AT4G32820			Tetratricopeptide repeat (TPR)...		Potri.018G057900 [exp]	17.66	0.8402
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124000 [exp]	18.97	0.8438
					Potri.012G066900 [exp]	19.36	0.8291

Compare expression of checked genes

Potri.011G009700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.