Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21630 673 / 0 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 278 / 7e-85 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G24550 242 / 4e-71 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G23750 243 / 1e-69 Leucine-rich repeat protein kinase family protein (.1) AT3G24540 231 / 3e-68 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G38560 234 / 6e-68 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT4G13190 225 / 1e-67 Protein kinase superfamily protein (.1) AT5G02800 223 / 4e-67 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G10620 231 / 9e-67 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT2G28590 223 / 2e-66 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G226600 [exp] 808 / 0 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 775 / 0 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.001G190200 [exp] 280 / 4e-85 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 277 / 8e-85 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 275 / 8e-84 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 271 / 2e-82 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 271 / 3e-82 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 239 / 5e-70 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 233 / 2e-68 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030022 [exp] 765 / 0 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 752 / 0 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035301 [exp] 598 / 0 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10004625 [exp] 287 / 4e-88 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 277 / 2e-84 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 277 / 6e-84 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 274 / 6e-83 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 246 / 6e-73 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10011098 [exp] 236 / 6e-69 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 234 / 8e-68 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G010000.1 pacid=42781364 polypeptide=Potri.011G010000.1.p locus=Potri.011G010000 ID=Potri.011G010000.1.v4.1 annot-version=v4.1 ATGATCCCATCATCCTCTAGGTATCCACACATTCAGACGTTGTTAGTCTCTTGTGTTCTTCTCTTCTTAGTCTTCAAAGTCCAAGCCAAGTGTAGAACAG GTTGTGGCCTTGCCTTGGCTTCGTATTATGTATGGCAAGGATCAAACCTAACTTATATCAGCACCATCTTCAACCAGAGCATTACTGAGATCCTTCGTTA CAATCCTAAAGTCCCAAATCAAGATAGCATACGTAGTGATACAAGACTCAACGTACCCTTTTCTTGTGATTGCTTAAATGGTGATTTCTTAGGGCATACC TTTTCTTACATTACTCAATCTGGTGATACTTACCATAAGATTGCAAGGAATGCCTTTTCTAACCTCACCACTGAGGATTGGGTTCACAGAGTCAACATTT ATGATATCACTGAGATACCAAACTATGTTCCTATTAATGTAACAGTGAACTGTACATGTGGAGATAAGCAGGTGTCAAGGGATTACGGATTGTTCACGAC CTACCCTCTTCGGCCCGACGAGAACTTGTCATCCTTAGAGGCGGAGTCCGGTGTGCCGGCTGATTTGTTAGAGAAGTACAACCTGGGGACGGATTTTAAT GCAGGGGGTGGGATTGTTTATATGCCGGCAAAAGATCCAACTGGAAATTATCCTCCTCTAAAGATTGCAACTGGAATCTCAAGCAGAGCCATTGCAGGCA TATCTGTTGCAGGAGTTGCTGGATCTTTCTTTTTGGCATCTTGTTTTTACTTTGGATTTTATAGAAGGAGAGAGGTTGAGGCATCATTGTTCCCAGAAGC AGCAGAAAGCCCCTATATTCACCACAGACATGGGTCTGGAAATATATTGGAGCAGACTTCGGAAACAGCTGCTCTTGTTGGTTCACCGGGGCTAACAGGT TTTACAGTGGACAAATCTGTGGAGTTCTCTTATGAAGAACTTGCTAAGGCTACTAATGACTTCAGCATGGATAATAAGATTGGACAAGGTGGGTTTGGAG CAGTGTACTATGCTGAACTAAGAGGCGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCGTCGAAAGAATTTCTCGCTGAGCTGAAGGTCTTAACACA CGTTCATCACTTAAATCTGGTGCGCTTAATAGGATATTGCGTCGAAGGTTCCCTATTCTTGGTCTATGAGTTCATTGAGAATGGAAATCTAGGTCAACAT TTGCGGAGTAATTCGGGTAAGGATCCATTGCCATGGTCGACTAGGGTACAAGTAGCTTTGGACTCAGCCAGAGGCCTTGAATACATCCATGAGCATACTG TACCTGTATATATCCACCGTGATGTCAAATCAGCAAACATTTTGATAGACAAAAACTTCCGCGGAAAGGTTGCGGATTTTGGTTTGACAAGGCTTACTGA AGTTGGAAGTGCTTCATTGCACACACGCCTTGTCGGTACATTTGGATACATGCCTCCAGAGTATGCTCAATATGGTGATGTCTCCTCCAAGATAGATGTA TATGCATTCGGAGTTGTGCTCTACGAACTGATATCCGCCAAGGAAGCTGTTGTCAAGACAAATGAATTTATCACTGAATCCATGGGACTTGTAGCTTTGT TTGAGGAAGTTCTGGGACAGCCTGATCCAAGAGAAAATCTCCCTAAGCTTGTTGATGCTAGGCTTGGAGACGACTACCCTCTTGACTCGGTTTGCAAGAT GGCCCAGCTTGCCAGAGCTTGCACACAAGAAAATCCGCATGTAAGGCCAAGCATGAGGTCGATTGTGGTTGCACTAATGACACTTTCCTCTTCAACTGAA GATTGGGATGTTGGTTCACTCTATGAAAATCAAGCTATTGTCGATCTAATGTCAGGAAGGTAG
AA sequence Show only first row Show all	>Potri.011G010000.1 pacid=42781364 polypeptide=Potri.011G010000.1.p locus=Potri.011G010000 ID=Potri.011G010000.1.v4.1 annot-version=v4.1 MIPSSSRYPHIQTLLVSCVLLFLVFKVQAKCRTGCGLALASYYVWQGSNLTYISTIFNQSITEILRYNPKVPNQDSIRSDTRLNVPFSCDCLNGDFLGHT FSYITQSGDTYHKIARNAFSNLTTEDWVHRVNIYDITEIPNYVPINVTVNCTCGDKQVSRDYGLFTTYPLRPDENLSSLEAESGVPADLLEKYNLGTDFN AGGGIVYMPAKDPTGNYPPLKIATGISSRAIAGISVAGVAGSFFLASCFYFGFYRRREVEASLFPEAAESPYIHHRHGSGNILEQTSETAALVGSPGLTG FTVDKSVEFSYEELAKATNDFSMDNKIGQGGFGAVYYAELRGEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEFIENGNLGQH LRSNSGKDPLPWSTRVQVALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTRLTEVGSASLHTRLVGTFGYMPPEYAQYGDVSSKIDV YAFGVVLYELISAKEAVVKTNEFITESMGLVALFEEVLGQPDPRENLPKLVDARLGDDYPLDSVCKMAQLARACTQENPHVRPSMRSIVVALMTLSSSTE DWDVGSLYENQAIVDLMSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	0	1
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	1.00	0.9956
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	1.41	0.9954
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	2.82	0.9890
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	3.00	0.9903
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	3.16	0.9870
AT2G01900			DNAse I-like superfamily prote...		Potri.012G041600 [exp]	4.69	0.9806
AT3G06880			Transducin/WD40 repeat-like su...		Potri.005G240100 [exp]	6.32	0.9760
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	6.63	0.9758
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239402 [exp]	7.00	0.9835
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	7.34	0.9848

Compare expression of checked genes

Potri.011G010000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.