Plant FIBer expression Database

Potri.011G010100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63520 394 / 5e-132 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G010200
[exp]
865 / 0 AT5G63520 427 / 3e-145 unknown protein
Potri.004G005700
[exp]
769 / 0 AT5G63520 419 / 8e-142 unknown protein
Potri.015G098700
[exp]
675 / 0 AT5G63520 426 / 6e-145 unknown protein
Potri.012G100500
[exp]
674 / 0 AT5G63520 425 / 3e-144 unknown protein
Potri.012G100600
[exp]
365 / 1e-120 AT5G63520 294 / 3e-93 unknown protein
Potri.015G098800
[exp]
363 / 7e-120 AT5G63520 282 / 1e-88 unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
CL0271 PF08495 FIST FIST N domain
CL0271 PF10442 FIST_C FIST C domain
Representative CDS sequence
>Potri.011G010100.2 pacid=42781914 polypeptide=Potri.011G010100.2.p locus=Potri.011G010100 ID=Potri.011G010100.2.v4.1 annot-version=v4.1
ATGGAGAAGAAACCTAAAGAACCCAAAACGCCATTGACAGGCTTTGCATCAATAAACGAAGACCTTGTTCAAAACATTCTAAAGAGAACACCAGCTACAT
CCTTCGCATCAGCAGCTTGTGTTAGCAAATCATGGAATCACAATTGCAATCAAATCCTCTCCAAACCAAAGCTTGCTTCTGCCTTTTCTCTCAACCCAGA
CCCAAAGGTTGCATTACAAGAGGTTGTGAGTAAGGTTCTCTCCGAGCCAATCAGACCCCAGTTTGCCATTGCAAATGTTATTGAGAGTGGTGTTGAATAT
TTGAGTGAAACACTCTATTTATTAGCGGCAAAACTTGGTTCAAAAACTCCGATTATAGTGTCCTGCACCAATGGAATCATAGGAAGAGATGCTGTTACTA
GTGAACATAAAGAGGTTATGTTGGAAGATTTTTGGGTTGATGCTGCATCAAAAAATTCAGGCTTTGGTATGCTGTTGACAGTGGGGTATTTACCAGGACT
CAAAGTCGAAGCCCTTCCACTGTTAAGGCCAAGAAAGGCTGGTCCAGTGGCAATGATTGATAACTTTGTGATGGATATCAAGAATTATTCAGCTTCTGTT
TCTGGTTCCACATCACCAGCTCTGATCATAATGTTTGGAGGTGAAGAGGCTGACCTCAAACCAGTCATGGAAAAGTTGGATCATGCCATGTCAAGGGAAA
CTATCATTGCCGGCGGTATGAGATCCCAATTCCTGTACAGAAGGGGCATAGAGTCAAGAAATATATATGGGAGTAGTACAAAATATTTTACTGATGCAGT
TGCTCTTGTATTTGCAAGGGATGAAGACAAACCTTCTGGTGAAGGGAAAATCCAATTCCATTCTGCAATATCAAGTGGTGTTTCAGCAATAGGACCAAGG
TACAAGGCAGTTTCCGTCAAAGAAACTCAATCTGAGACAGGTCTTACTACATGGCTTACTTCCAGAAGAGAAGGAGAACAAGAGATTCTTGGTGGTCAAA
TGATTATAGACAGCATCGAGAGTGAGTTGGTGAACAAAACTGAACTGTTCATTGGGGTTTCAAAACAAAGACAAAGCGTTATTGGGTCAGAGAATCCAAA
ACTGTTGAGATCCCTGGCTTTACATCAAGTTAAGGGAGGAGATGGAGAGCACCTTTTTGTTAGTGGAGATGGCATCGGTTCTGGAGACTATTTTCATTTC
TACCATTCAGATCCAAAGGCCGCATTATCTGCAACTAGTAATGTCTCCAAGTATTTCAGAAACTTGAAACTGGATTGGAGAAGCTGCCAGCTTCATGCAG
GTGATGTTGGTAGTAAGGAAGTTGTTGGAGGTTTGGTTTTCTCTTGTTGGGGCCGTGGTGCATCATTCTTTGGACACAGCAATGTGGATAGCTCACCATT
CTTGGATAACTTTCCAGGAATCCCAATGGCAGGAATATTTGGCTGTGGCGAAGTCGGACGTGGCTTTACCATGTTGAACGCAGATGATCATGTAGACCAA
GAAGAAAAGACTTCGTGTTGCTGTCTACATGTATATAGCACTGTATATGTGTTGGTGTCTTATACTCCAGCACCTCTAAAGCATTAG
AA sequence
>Potri.011G010100.2 pacid=42781914 polypeptide=Potri.011G010100.2.p locus=Potri.011G010100 ID=Potri.011G010100.2.v4.1 annot-version=v4.1
MEKKPKEPKTPLTGFASINEDLVQNILKRTPATSFASAACVSKSWNHNCNQILSKPKLASAFSLNPDPKVALQEVVSKVLSEPIRPQFAIANVIESGVEY
LSETLYLLAAKLGSKTPIIVSCTNGIIGRDAVTSEHKEVMLEDFWVDAASKNSGFGMLLTVGYLPGLKVEALPLLRPRKAGPVAMIDNFVMDIKNYSASV
SGSTSPALIIMFGGEEADLKPVMEKLDHAMSRETIIAGGMRSQFLYRRGIESRNIYGSSTKYFTDAVALVFARDEDKPSGEGKIQFHSAISSGVSAIGPR
YKAVSVKETQSETGLTTWLTSRREGEQEILGGQMIIDSIESELVNKTELFIGVSKQRQSVIGSENPKLLRSLALHQVKGGDGEHLFVSGDGIGSGDYFHF
YHSDPKAALSATSNVSKYFRNLKLDWRSCQLHAGDVGSKEVVGGLVFSCWGRGASFFGHSNVDSSPFLDNFPGIPMAGIFGCGEVGRGFTMLNADDHVDQ
EEKTSCCCLHVYSTVYVLVSYTPAPLKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63520 unknown protein Potri.011G010100
[exp]
0 1
AT1G13480 Protein of unknown function (D... Potri.008G109400
[exp]
2.82 0.9248
AT4G27290 S-locus lectin protein kinase ... Potri.001G410800
[exp]
3.31 0.9058
AT4G32300 SD2-5 S-domain-2 5 (.1) Potri.004G014301
[exp]
6.00 0.9338
AT1G06460 ACD31.2, ACD32.... ALPHA-CRYSTALLIN DOMAIN 31.2, ... Potri.014G141500
[exp]
8.48 0.9230 Pt-ACD32.1
AT1G30260 AGL79 unknown protein Potri.011G081001
[exp]
9.48 0.9235
Potri.003G088201
[exp]
12.00 0.8956
AT5G01550 LECRKA4.2 lectin receptor kinase a4.1 (.... Potri.016G123401
[exp]
16.91 0.8852
AT5G54770 THI4, TZ, THI1 THIAZOLE REQUIRING, THIAMINE4,... Potri.011G025200
[exp]
17.14 0.9124
Potri.012G120584
[exp]
17.74 0.9113
AT4G23990 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE... Potri.003G142301
[exp]
18.16 0.9132

Potri.011G010100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.