Plant FIBer expression Database

Potri.011G010200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63520 427 / 4e-145 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G010100
[exp]
910 / 0 AT5G63520 394 / 2e-132 unknown protein
Potri.004G005700
[exp]
833 / 0 AT5G63520 419 / 8e-142 unknown protein
Potri.012G100500
[exp]
743 / 0 AT5G63520 425 / 3e-144 unknown protein
Potri.015G098700
[exp]
714 / 0 AT5G63520 426 / 6e-145 unknown protein
Potri.012G100600
[exp]
404 / 7e-136 AT5G63520 294 / 3e-93 unknown protein
Potri.015G098800
[exp]
399 / 6e-134 AT5G63520 282 / 1e-88 unknown protein
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
CL0271 PF08495 FIST FIST N domain
CL0271 PF10442 FIST_C FIST C domain
Representative CDS sequence
>Potri.011G010200.1 pacid=42782400 polypeptide=Potri.011G010200.1.p locus=Potri.011G010200 ID=Potri.011G010200.1.v4.1 annot-version=v4.1
ATGGAGAAGAAACCTAAAGAAGCAAGAACGCCAATATTGACAGGCTTTGCGTCAATAAACGAAGACCTTGTTCAAAACATTCTGAAGAGAACACCAGCTT
CATCCTTTGCATCAGCTGCTTGTGTTTGCAAATCATGGAACCAAACTTGCAATCAAATCCTCTCCAAACCAAAGCTTGCTTCTGCCTTTTCTCTCAACCC
AGACCAGAAGGTTGCATCACAAGAGGTTGTGAATAAGGTTCTCTCCGAGCCAATCAGACCCCAGTTTGCCATTGCAAATGTTATTGGGAGTGGTGTTGAT
TTGAGTGAAACCCTCAATTTTTTAGCAGCGAAACTTGGTTCAAAAACTCCAATTATTGTGTCTTGTGCAAATGGAATCATAGGAAGAGACGCTGTTACTG
ATGAACATCAAGAGGTTATGTTAGAAGATTTTTGGGCTGATGCTGCATCAAAAAATTCAGGCTTTGGTGTCCTGCTGACTGTGGGATTCTTACCGGGACT
CCAAGTTGAAGCTATCCCGCTGTTACGGCCAAGAAAGGCAGCTAGTCGAATGGCATTGGTTGATAAGTTTGTGATGGATATTAGAAATTACGCAGCATAT
GTTTCTGGTTCCACTTCACCGGCTCTCGTTATAATGTTTGGAGGTGAAAAGGCCGAGCAAAAACCTGTCATGGAAAAGTTGGATCATGCCATGTCGAGGG
AAACTTTCATTGCGGGTGATGAGAGAGCCCAATTCCTGTACAAAAGTGGCATAGAGTCAAGAAATGTACATGGGAGCGGCAATGAATATATTTCTGATGC
AGTTGTTCTTGTATTTGCAAGGGATCGACACAGAGCTTCTGATGTAGGGGAAATCCAGTTCCATTCTGCATTATCAAGTGGTGTTTCTACAATAGGTCCA
AGGTACAAGGTAGTTTCTGTCAAAGAGATTCAACCTGAGACAGATCTTACTACATGCCTTAAAGCTAGAAGAGAAGGAGAGCAAGAGATTCTTGGAGGTC
AAAGGATTATAGATGACATCAACAATGAGTTGGTGAACAAAACTGAACTGTTCATTGGGGTTTCAAAACAAAGACAATGCGTTATTGGGTCAGAGAATCC
AAAACTGTTGAGATCCCTGGCTTTCCATGAAGTTAAGGGAGGAGATGGAGAGCACCTTTTTGTTAGTGGAGATGGCATCGGTTCTGGAGACTATTTTCAT
TTCTACCATTCAGATTCAAAGGCCGCATTATCTGCAACTAGTAATGTCTCCAAGAATTTCAGAAACTTGAAACTAGATTGGAGTAGCAGCCAGCTTCATG
CAGGTGGTGTTGGTAGTAAGGAAGTAGTTGGAGGTTTGGTTTTCTCTTGTTGGGGCCGTGGTGAATCATTCTTTGGACACAGCAATGTGGATAGCTCACC
ATTCTTGGATAACTTTCCAGGAATCCCAATGGCAGGAATATTTTGCTATGGCGAAGTCGGACGTGGCTTTACAATGTTGAACGCAGATGATCATGAAGAC
CAAGAAGAAAAGACTTCGTGTTGCTGTCTACATGTATATAGCACTATATATGTGTTGGTGTCTTATACTCCAGCACCTCTAAAGCATTAG
AA sequence
>Potri.011G010200.1 pacid=42782400 polypeptide=Potri.011G010200.1.p locus=Potri.011G010200 ID=Potri.011G010200.1.v4.1 annot-version=v4.1
MEKKPKEARTPILTGFASINEDLVQNILKRTPASSFASAACVCKSWNQTCNQILSKPKLASAFSLNPDQKVASQEVVNKVLSEPIRPQFAIANVIGSGVD
LSETLNFLAAKLGSKTPIIVSCANGIIGRDAVTDEHQEVMLEDFWADAASKNSGFGVLLTVGFLPGLQVEAIPLLRPRKAASRMALVDKFVMDIRNYAAY
VSGSTSPALVIMFGGEKAEQKPVMEKLDHAMSRETFIAGDERAQFLYKSGIESRNVHGSGNEYISDAVVLVFARDRHRASDVGEIQFHSALSSGVSTIGP
RYKVVSVKEIQPETDLTTCLKARREGEQEILGGQRIIDDINNELVNKTELFIGVSKQRQCVIGSENPKLLRSLAFHEVKGGDGEHLFVSGDGIGSGDYFH
FYHSDSKAALSATSNVSKNFRNLKLDWSSSQLHAGGVGSKEVVGGLVFSCWGRGESFFGHSNVDSSPFLDNFPGIPMAGIFCYGEVGRGFTMLNADDHED
QEEKTSCCCLHVYSTIYVLVSYTPAPLKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63520 unknown protein Potri.011G010200
[exp]
0 1
AT3G29185 Domain of unknown function (DU... Potri.004G120900
[exp]
3.60 0.9779
AT1G71720 PDE338 PIGMENT DEFECTIVE 338, Nucleic... Potri.002G063400
[exp]
4.89 0.9738
AT1G65260 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PL... Potri.016G099400
[exp]
4.89 0.9714 IM30.2
AT1G65260 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PL... Potri.006G123600
[exp]
5.29 0.9776
AT1G10910 EMB3103 EMBRYO DEFECTIVE 3103, Pentatr... Potri.001G211300
[exp]
6.70 0.9718
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Potri.013G148900
[exp]
7.48 0.9735 Pt-PETC.2
AT4G19985 Acyl-CoA N-acyltransferases (N... Potri.019G065400
[exp]
7.48 0.9680
Potri.011G080900
[exp]
12.00 0.9676
AT5G52440 HCF106 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.015G147100
[exp]
13.56 0.9709 Pt-HCF106.1
AT4G35220 Cyclase family protein (.1) Potri.001G301600
[exp]
14.69 0.9472

Potri.011G010200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.