Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04330 210 / 3e-70 AtRbcX1 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053300 [exp] 42 / 9e-05 AT5G19855 230 / 4e-77 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Potri.001G258100 [exp] 39 / 0.0006 AT5G19855 259 / 2e-88 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011972 [exp] 183 / 3e-59 AT4G04330 189 / 1e-61 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1) Lus10004588 [exp] 106 / 1e-29 AT4G04330 119 / 9e-35 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02341 [poplar] [flax] RcbX RbcX protein
Representative CDS sequence Show only first row Show all	>Potri.011G010300.1 pacid=42781246 polypeptide=Potri.011G010300.1.p locus=Potri.011G010300 ID=Potri.011G010300.1.v4.1 annot-version=v4.1 ATGGAAACCTCTTCAGTTCTGTCACTCTCTCAGCTCTCTTTTTTCTTACCAAAACCTTACAGGAACAAAGCTTATCCTTCTTGGTCATGCAAGAAACCAA GAACCACTCAACCAACTCGCTTGTACTGCCAAAAGATGTATGTCCCTGGATTTGGAGAAGCATCACCAGAGAAAAAGGCAGCAAAAAACCTGCATGATTT CTTCACTTACATTGCTGTTAGAATTGTCACTGCACAGCTAGAGAGCTATAGCCCCGAAGCATATGAAGAGTTGATGGAGTTTTTGAGTAGGCATTCCTTG AATGATGGAGACAAATTTTGTGCTGAACTGATGAGGGAATCTTCTAGGCATAAGGGTTTGGCTATGCGAATCTTAGAGGTTCGATCTGCGTACTGTAAGA ATGATTTTGAGTGGGACAACTTGAAGAGATTATCAGTGAAGATGGTTGATGAATCAAACACAAGCCTCATGAGAGATTATGTTGTCGAAACAAGCCCCAC TAAAGAAAGTGAGAAGTGA
AA sequence Show only first row Show all	>Potri.011G010300.1 pacid=42781246 polypeptide=Potri.011G010300.1.p locus=Potri.011G010300 ID=Potri.011G010300.1.v4.1 annot-version=v4.1 METSSVLSLSQLSFFLPKPYRNKAYPSWSCKKPRTTQPTRLYCQKMYVPGFGEASPEKKAAKNLHDFFTYIAVRIVTAQLESYSPEAYEELMEFLSRHSL NDGDKFCAELMRESSRHKGLAMRILEVRSAYCKNDFEWDNLKRLSVKMVDESNTSLMRDYVVETSPTKESEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Potri.011G010300 [exp]	0	1
AT3G18870			Mitochondrial transcription te...		Potri.004G150600 [exp]	1.41	0.9858
AT1G49975			unknown protein		Potri.009G086400 [exp]	2.00	0.9831
AT1G36320			unknown protein		Potri.002G091000 [exp]	3.46	0.9759
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.010G153900 [exp]	3.74	0.9731
AT1G23180			ARM repeat superfamily protein...		Potri.008G131900 [exp]	4.00	0.9755
					Potri.010G145700 [exp]	5.47	0.9680
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	5.91	0.9755
AT4G21500			unknown protein		Potri.004G034200 [exp]	6.40	0.9520
AT5G38290			Peptidyl-tRNA hydrolase family...		Potri.004G098100 [exp]	6.92	0.9655
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.010G042500 [exp]	7.74	0.9743

Compare expression of checked genes

Potri.011G010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.