Plant FIBer expression Database

Potri.011G010400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G04320 699 / 0 malonyl-CoA decarboxylase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G005500
[exp]
912 / 0 AT4G04320 700 / 0.0 malonyl-CoA decarboxylase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020031
[exp]
627 / 0 AT4G04320 575 / 0.0 malonyl-CoA decarboxylase family protein (.1.2)
Lus10015550
[exp]
163 / 2e-46 AT4G04320 158 / 3e-45 malonyl-CoA decarboxylase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF05292 MCD Malonyl-CoA decarboxylase C-terminal domain
Representative CDS sequence
>Potri.011G010400.1 pacid=42782087 polypeptide=Potri.011G010400.1.p locus=Potri.011G010400 ID=Potri.011G010400.1.v4.1 annot-version=v4.1
ATGCGAACCAAAATGAGACTTAATAATGACCCCTCGAAGCTTTCTCTCTCTCCTTTAGTCTCTAATGGGATTAGTCAAATGATGTCTAATCCTCCAAGAA
ATGAAGGGTCTTCAGCGGTTTCAAGCATCAAGTCCAGTGCTTTTGGAAATCATACTGAGAGGAATTTTGATGTAGTAAAGGATTCCATGGGCTTGGCAAT
ATCTTTGAACAAAACTGAATCTTTGGATGCTGTACTTGATGATTTCTCTGAGGGTTATTTTAGTCTTTCGAATGAAAATCGGAAGAAATTGTTGCTTGTG
CTTGCAAAAGAGTATGATCTTAATAGGAATCAAGTTCGTGAATTGTTGAAGCAATATCTTGGACTTGAACTTCAAAGTGGTAATGAAGGTGAATCGAGTA
ATGTTGATGATGGGAGTGTGTTGTTTTCTGCTTTCTATCAGATTGAGAAAAACTTGAGACAAGCTCTTAAGCCGACGTATGATGTTCTTTTTGAACGGTT
TAATAATCATACTGGGGGTTTGAAGTTCTTGTCGATTCTTCGAGCTGATATCTTGTCCATTCTCGAACATGAAAATATTGTGTCTTTGCGAGCATTAGAA
TACTTCTTAAAGGAGAAACTTAGTACTTGGCTTAGTCCAGCTGCATTGGAGCTTCACCAGATTACATGGGATGATTCTGCTTCTTTGCTGGAGAAAATTG
TGGCTTATGAGGCTGTGCATCCAATCAACAATCTTTTGGATCTTAAAAGAAGGTTGGGCATTGGCCGCCGTTGTTTTGGGTATTTGCATACATCAATACC
AGGTGAGCCCCTTATTTTCATAGAAGTTGCGCTTCTGAAGAATGTGGCTCAGACAATACAGGAAGTTTTGTGGGACGATCCTTCCATACCTGAACCTGAG
GCCACATGTGCATTATTTTATTCTATATCGTCTACTCAGCCTGGCTTGGCAGGGATCAATCTAGGGAAGTTTCTTGTTAAACGTGTGATCACATTGGTGA
AAAGAGATATGCCACAAGTATCTACATTTGCAACACTAAGCCCAATCCCCGGATACATGCAATGGTTGCTATCTAAGCTGGCATCTCAATCAGTACTTGC
TAAAGGAGACAACACGGAACAACCAGCAGGTGGATCTGGTTCCACTTTTCAGGAGAATTTACTTGAACCAGATGAAGAAAGAATGCTCATGAATTCTGCT
CCGGAGACTTGTGCTGGAAAAAATGGCATGGAAGTGATGCTGAACTTGCTGACAGCAACAAACTATGAGTGGACCAGTTCAGCTGAATTAGTCTCTGCCT
TGAAGCCCCCTCTAATGCGGTTGTGTGCCAGGTACCTTCTCCAAGAGAAGAAGGGAGGAAAAGCTCTAGATTCTGTGGCGAATTTTCACTTGCAAAATGG
AGCGATGGTTGAAAGATTAAATTGGATGGCAGACCGGTCTGAGAAAGGTCTTCGTCAAAGTGGAGGTATCATGGTGAACTACATGTACAGGGTGGAGCAC
ATTGAAGAATATGCTCAATCATATTTCAGCACTGGGCATATACATGCTTCGAGTGACGTTCGCCTCTATACCATGCCACAGAAGGAACATGAGGCGACTG
CAGATTAG
AA sequence
>Potri.011G010400.1 pacid=42782087 polypeptide=Potri.011G010400.1.p locus=Potri.011G010400 ID=Potri.011G010400.1.v4.1 annot-version=v4.1
MRTKMRLNNDPSKLSLSPLVSNGISQMMSNPPRNEGSSAVSSIKSSAFGNHTERNFDVVKDSMGLAISLNKTESLDAVLDDFSEGYFSLSNENRKKLLLV
LAKEYDLNRNQVRELLKQYLGLELQSGNEGESSNVDDGSVLFSAFYQIEKNLRQALKPTYDVLFERFNNHTGGLKFLSILRADILSILEHENIVSLRALE
YFLKEKLSTWLSPAALELHQITWDDSASLLEKIVAYEAVHPINNLLDLKRRLGIGRRCFGYLHTSIPGEPLIFIEVALLKNVAQTIQEVLWDDPSIPEPE
ATCALFYSISSTQPGLAGINLGKFLVKRVITLVKRDMPQVSTFATLSPIPGYMQWLLSKLASQSVLAKGDNTEQPAGGSGSTFQENLLEPDEERMLMNSA
PETCAGKNGMEVMLNLLTATNYEWTSSAELVSALKPPLMRLCARYLLQEKKGGKALDSVANFHLQNGAMVERLNWMADRSEKGLRQSGGIMVNYMYRVEH
IEEYAQSYFSTGHIHASSDVRLYTMPQKEHEATAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G04320 malonyl-CoA decarboxylase fami... Potri.011G010400
[exp]
0 1
Potri.007G086250
[exp]
1.00 0.9265
AT2G26930 CMK, CMEK, ISPE... PIGMENT DEFECTIVE 277, 4-\(cyt... Potri.009G021800
[exp]
7.93 0.7952
AT4G05030 Copper transport protein famil... Potri.006G002000
[exp]
8.36 0.8808
AT1G18440 Peptidyl-tRNA hydrolase family... Potri.012G061100
[exp]
10.24 0.8193
AT5G07820 Plant calmodulin-binding prote... Potri.012G067100
[exp]
11.83 0.8594
AT5G40240 nodulin MtN21 /EamA-like trans... Potri.015G073200
[exp]
14.79 0.7876
AT5G17610 unknown protein Potri.013G073100
[exp]
15.74 0.8226
Potri.006G267450
[exp]
16.43 0.8394
AT1G80900 MRS2-10, ATMGT1 magnesium transporter 1 (.1) Potri.007G098000
[exp]
17.74 0.8541
AT3G26590 MATE efflux family protein (.1... Potri.008G187100
[exp]
17.94 0.8408

Potri.011G010400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.