Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22130 917 / 0 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G53730 607 / 0 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 422 / 2e-138 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT2G20850 387 / 6e-124 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G03390 384 / 1e-122 SRF3 STRUBBELIG-receptor family 3 (.1) AT1G78980 372 / 6e-119 SRF5 STRUBBELIG-receptor family 5 (.1) AT1G11130 326 / 9e-101 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G13065 323 / 3e-100 SRF4 STRUBBELIG-receptor family 4 (.1) AT5G02800 284 / 3e-89 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT4G13190 280 / 2e-87 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G005301 [exp] 1184 / 0 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.001G161600 [exp] 454 / 4e-150 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 442 / 9e-146 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.019G103900 [exp] 405 / 1e-130 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.014G001200 [exp] 398 / 1e-128 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.013G144600 [exp] 391 / 2e-125 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.007G002600 [exp] 382 / 4e-123 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.004G037000 [exp] 363 / 5e-115 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 358 / 4e-113 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015549 [exp] 974 / 0 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 973 / 0 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10037464 [exp] 449 / 4e-149 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10003926 [exp] 449 / 2e-148 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10039795 [exp] 390 / 3e-125 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 391 / 5e-125 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 377 / 7e-120 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018563 [exp] 373 / 3e-119 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033333 [exp] 370 / 7e-118 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 365 / 1e-116 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G010500.1 pacid=42781263 polypeptide=Potri.011G010500.1.p locus=Potri.011G010500 ID=Potri.011G010500.1.v4.1 annot-version=v4.1 ATGGCATTGAAGCACTTTGAGTTGCTTTTGTTTGTGTTTGTGGTTAAAGTTTTGATCTTTGGTTTCCCAGTTCTTGTCCAATGCACTACTGATGCTAATG ATGTTCAAGCTCTACAATCTATGTACTCTTCACTGAATAGTCCTTCACAGCTGACCAGTTGGAAAAGTATTGGTGGTGATCCATGTGGAGAGTCATGGAA AGGGATCACCTGTGAAGGATCAGCTGTTGTTTCCGTTCAGATTTCTGGGTTAGGACTTGACGGAACAATGGGATACATGCTTTCAAACCTCATGTCATTG AGAACATTTGATCTAAGTGACAACAACATTCATGATCCACTCCCATATCAGTTGCCACCGAATCTTACAAGCTTAAATCTTGCCATAAACAACTTCAGTG GGAATCTTCCTTATTCCATTTCTACCATGGTTTCTCTTAGCTACCTGAATGTAAGCCGTAATTCACTGTCCCAGTCAATTGGAGATGTTTTCCATAATCT TTCTCTCCTCTCAACCATGGATGTCTCTTTCAACAACCTTAGTGGAGATATTCCCAGTTCCTTTAGTTCATTGTCCAATCTTTCTACACTCAATGTTCAG AACAATCAACTGACAGGTTCTCTTAATGCTCTTACTGGTTTGCCTTTGACGACTCTAAATGTTGCAAACAACAATTTGAGTGGATGGATACCTCAAGAGC TTAGTTCAATCCCAAACTTTATATACAATGGAAATTCTTTTGACAATGGTCCTGCTCCACCTCCGCCACCATATACCTCTCCACCTTCTGGTAAATCTCA CAGAAACCGTACTCATCCAGGATCTGGTGCACCTAGGACCTCATCTTCTGATGGTCAACCATCTGAGTCAGATAAGGGGATATCAGTGGGAGCAATTGTA GGGGTAGCCCTAGGTTCTGTGGTTCTGGTTCTCATTGCACTACTTGCTCTTGTCTTTTGCATTAAAAAGCATCAAGGCAAGGAAATTGATCCTCTAGCTT CCCGGGGAAGTCGTCCTGCTGATACATATTATACTGGTGCAGAGATGCAAGAGCCAAGGGTGAAAAACATGGCTGCTGTTACGGATCTGAAGCCCCCACC TGCTGAGAAATTGGTGGCTGAGAGATTACTAGGGAATTCTGGATCCATAAAGAGAATGAAGTCGCCCATCACTGCCACTTCATATAGTGTTGCTTCTCTT CAAACAGCAACAAATAGCTTTAGTCAAGAGTTTATAATTGGTGAAGGTTCTCTTGGTCGTGTTTACAGAGGGGACTTTCCTCATGGAAAGATAATGGCTG TTAAGAAGATCGACAATGCAGCACTGTCATTACAGGAGGAAGATAACTTTCTTGAAGCTGTTTCAAATATGTCACACTTGAGGCACCCAAACATCGTTTC CCTAGTAGGATACTGTGTAGAGCATGGGCAGCGACTTTTGGTTTATGAATTTATAGCAAATGGGAGTCTGCATGATATACTGCACTTTGCTGATGATGGC AGCAAGACTTTATCTTGGAATGCACGTGTTAGAGTAGCACTTGGCACTGCCCGGGCTTTAGAGTACTTGCATGAAGTCTGTTTGCCTTCTGTTGTACATA GAAACTTCAAGTCAGCTAATATTTTACTTGATGAAGAACTCAATCCCCACTTGTCAGACTGTGGTTTAGCTGCTCTGACTCCAAACACAGAGAGACAGGT TTCAACACAGATGGTTGGTTCATTTGGTTATAGTGCTCCTGAATTTGCCCTGTCAGGAATATACACTGTAAAAAGTGATGTCTACAGCTTTGGGGTGGTG ATGTTGGAGCTATTGACTGGTCGGAAGCCACTGGACAGTTCGAGGGTGAGATCAGAGCAGTCACTTGTTAGATGGGCTACTCCTCAACTGCATGATATCG ATGCCTTGGCAAAAATGGTTGATCCTGCCCTGAATGGCATGTATCCTGCAAAGTCTCTTTCACGTTTTGCTGACATCATTGCCCTCTGTGTTCAGCCGGA ACCGGAGTTCCGCCCTCCCATGTCTGAAGTTGTGCAAGCATTAGTACGACTAGTGCAAAGGGCCAGTGTGGTCAAGAGACGACCCAGTGATGATTCAGGG TTTGCATATAAAACCCCGGATCATGAGGCAATCGATTCAGCATTTTGA
AA sequence Show only first row Show all	>Potri.011G010500.1 pacid=42781263 polypeptide=Potri.011G010500.1.p locus=Potri.011G010500 ID=Potri.011G010500.1.v4.1 annot-version=v4.1 MALKHFELLLFVFVVKVLIFGFPVLVQCTTDANDVQALQSMYSSLNSPSQLTSWKSIGGDPCGESWKGITCEGSAVVSVQISGLGLDGTMGYMLSNLMSL RTFDLSDNNIHDPLPYQLPPNLTSLNLAINNFSGNLPYSISTMVSLSYLNVSRNSLSQSIGDVFHNLSLLSTMDVSFNNLSGDIPSSFSSLSNLSTLNVQ NNQLTGSLNALTGLPLTTLNVANNNLSGWIPQELSSIPNFIYNGNSFDNGPAPPPPPYTSPPSGKSHRNRTHPGSGAPRTSSSDGQPSESDKGISVGAIV GVALGSVVLVLIALLALVFCIKKHQGKEIDPLASRGSRPADTYYTGAEMQEPRVKNMAAVTDLKPPPAEKLVAERLLGNSGSIKRMKSPITATSYSVASL QTATNSFSQEFIIGEGSLGRVYRGDFPHGKIMAVKKIDNAALSLQEEDNFLEAVSNMSHLRHPNIVSLVGYCVEHGQRLLVYEFIANGSLHDILHFADDG SKTLSWNARVRVALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVV MLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPALNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDDSG FAYKTPDHEAIDSAF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.011G010500 [exp]	0	1
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.017G068400 [exp]	1.73	0.8866
AT3G54400			Eukaryotic aspartyl protease f...		Potri.001G028200 [exp]	3.00	0.8755
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.015G057800 [exp]	3.46	0.8758
AT5G01120			Protein of unknown function (D...		Potri.001G247200 [exp]	4.24	0.8178
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.001G326200 [exp]	5.65	0.8338
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	8.48	0.7799
AT3G16300			Uncharacterised protein family...		Potri.001G188000 [exp]	9.69	0.7266
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	10.48	0.7885
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	10.67	0.8254
AT1G75060			unknown protein		Potri.014G041200 [exp]	10.95	0.8189

Compare expression of checked genes

Potri.011G010500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.