Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62330 714 / 0 O-fucosyltransferase family protein (.1) AT1G11990 642 / 0 O-fucosyltransferase family protein (.1) AT1G29200 509 / 1e-176 O-fucosyltransferase family protein (.1.2.3) AT4G38390 281 / 2e-87 RHS17 root hair specific 17 (.1) AT2G01480 278 / 6e-86 O-fucosyltransferase family protein (.1) AT4G24530 267 / 2e-82 O-fucosyltransferase family protein (.1) AT1G35510 266 / 2e-81 O-fucosyltransferase family protein (.1) AT3G26370 265 / 5e-81 O-fucosyltransferase family protein (.1) AT1G14970 265 / 7e-81 O-fucosyltransferase family protein (.1) AT5G65470 263 / 8e-81 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G005100 [exp] 928 / 0 AT1G62330 709 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 555 / 0 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.004G058900 [exp] 549 / 0 AT1G29200 687 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.001G157400 [exp] 281 / 1e-87 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 277 / 2e-85 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 271 / 4e-84 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 272 / 1e-83 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 272 / 2e-83 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 271 / 2e-83 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015558 [exp] 755 / 0 AT1G62330 733 / 0.0 O-fucosyltransferase family protein (.1) Lus10029239 [exp] 540 / 0 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10007290 [exp] 526 / 0 AT1G29200 699 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10004729 [exp] 271 / 4e-83 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 267 / 5e-82 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 266 / 3e-81 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 266 / 5e-81 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 272 / 1e-79 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 258 / 8e-79 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 258 / 9e-79 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.011G010600.1 pacid=42781229 polypeptide=Potri.011G010600.1.p locus=Potri.011G010600 ID=Potri.011G010600.1.v4.1 annot-version=v4.1 ATGTCCTCCTCAGCTGACTTCTATAATATACCCTCATCACCGAGTCAGTCTCCTCGGCCCGGACAAAAGAAAGGGAGGAGAAAGAGAGAGAGGGAGAAGG TTTTTTGGTATCAGAAGAAGGGAGCCAAAGGAATTGTGGGTTTGATTTTTTTGGTGGGTTTGTTTTTTATTTTCAATGGGTTCATGGTTTTAAGGCTTCA ACTTGATGATGAAATCAGCGGCAACAAAGATGTGTCTGTTCGGAATTCTTCTTCAATTTCAGTTTCGATAAAGGGAGAATTGAAAACGATTGGTAAAGGA AAAAGGCTGCGAAAGGGTACTTATGATAGGATGTTGGCTTTGGCTGCTCATTCCCTTGCTGAGAATAAACGTGAGCCGAAAGATTTGTGGCAGGAGCTGT TTGTTCCTGCTTCTGCTTGGAGACCTTGTGCTGATCATCGTAATTGGAATCACAGTGAGGGAAACAATGGTTACATTTTGGTCACTGCGAATGGTGGGAT GAACCAGCAAAGAGTAGCTGTTTGCAATGCTGTTGTTATTGCACGGTTGTTGAATTCAACTCTTGTTATTCCTAGATTTATGTACAGCAGCGTCTGGAGA GATGTGAGTCAATTCAGTGACATCTATCAGGAGGAGCATTTTATTAATTACCTCACTCCTGATATTCGGATAGTGAAGGAACTGCCTAAAGAGCTGCAGT CGCTAGATTTGGAGGCAATTGGTAGTGTTGTGACAGATGCAGATATTGGGAAAGAATCAAAGCCAAGTTTTTATTTGAAAAACATTCTCCCTATATTACT AAAAAATAGAGTTGTCCATTTTGTTGGATTTGGGAATCGCTTGGCATTTGATCCAATACCATTTCAGTTACAGACACTTCGGTGCAGATGTAATTTTCAT GCGCTGCAATTTTCTCCCAAGATACAAGAAACTGTTGCCTTGCTCATCCAAAGGTTGCGTAAAAATGCTGCCCATTCAGGGCCACTGGATCATTATCTTA TCGGTCCTTATGCAGAAAAAAATCTGCAAGAGAAAGTGGGTCATGCTGTCAAAGCTTCAAGATATCTAGCTCTACATCTGAGGTTCGAAATTGACATGGT AGCACACTCTTTGTGTGAATACGGTGGAGGAGAAGAAGAGAGGAAAGAGTTGGAAGCGTATCGTGAGATTCATTTCCCTGCTCTGACACTTCTTAAGAAG ACAAATAAGCTACCTTCTCCTGCAATGCTGAGGGAAGAAGGCTTATGTCCCTTAACTCCTGAGGAAGCAGTACTTATGCTTGCAGCTCTAGGGTTCAGTA GGAAGACACATATATTCATAGCAGGTGCAAATATATATGGAGGGAGATCAAGATTAACTGCTTTAACCAGCTTGTATCCTAATTTAGTTACTAAAGAGAA ACTGCTTTCAGCAACTGAACTCAAACCATTCATGAATTTTTCATCTCAGCTTGCAGCGCTGGACTTCATAGCCTGCACCGCGTCTGATGCATTTGCCATG ACGGACTCTGGGAGTCAGTTGTCATCTTTGGTTTCTGGTTTTCGAATATACTATGGTGGAGGGAAGATGCCAACAATACGACCAAACAAGCGGAGACTTG CTGACATTTTCAGGAAGAACAACAGTATTGAATGGAAGATATTTGAGCAGAGAGTTAGAAAGGCAGTTAGACAAACTAAACATGTGCTGCAAAGGCCAAA GGCTAGGAGTGTTTACAGATATCCACGGTGTAAAGAGTGTATGTGCCTAACAGAATAA
AA sequence Show only first row Show all	>Potri.011G010600.1 pacid=42781229 polypeptide=Potri.011G010600.1.p locus=Potri.011G010600 ID=Potri.011G010600.1.v4.1 annot-version=v4.1 MSSSADFYNIPSSPSQSPRPGQKKGRRKREREKVFWYQKKGAKGIVGLIFLVGLFFIFNGFMVLRLQLDDEISGNKDVSVRNSSSISVSIKGELKTIGKG KRLRKGTYDRMLALAAHSLAENKREPKDLWQELFVPASAWRPCADHRNWNHSEGNNGYILVTANGGMNQQRVAVCNAVVIARLLNSTLVIPRFMYSSVWR DVSQFSDIYQEEHFINYLTPDIRIVKELPKELQSLDLEAIGSVVTDADIGKESKPSFYLKNILPILLKNRVVHFVGFGNRLAFDPIPFQLQTLRCRCNFH ALQFSPKIQETVALLIQRLRKNAAHSGPLDHYLIGPYAEKNLQEKVGHAVKASRYLALHLRFEIDMVAHSLCEYGGGEEERKELEAYREIHFPALTLLKK TNKLPSPAMLREEGLCPLTPEEAVLMLAALGFSRKTHIFIAGANIYGGRSRLTALTSLYPNLVTKEKLLSATELKPFMNFSSQLAALDFIACTASDAFAM TDSGSQLSSLVSGFRIYYGGGKMPTIRPNKRRLADIFRKNNSIEWKIFEQRVRKAVRQTKHVLQRPKARSVYRYPRCKECMCLTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62330			O-fucosyltransferase family pr...		Potri.011G010600 [exp]	0	1
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.013G021900 [exp]	16.06	0.8515
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119650 [exp]	16.12	0.8429
AT3G13340			Transducin/WD40 repeat-like su...		Potri.001G471800 [exp]	19.28	0.7775
					Potri.001G178600 [exp]	21.81	0.8230
					Potri.001G355650 [exp]	22.97	0.8328
AT2G03350			Protein of unknown function, D...		Potri.010G162400 [exp]	24.33	0.8383
					Potri.001G177201 [exp]	35.70	0.8271
AT1G58070			unknown protein		Potri.003G009400 [exp]	43.26	0.8138
AT1G32310			unknown protein		Potri.001G138700 [exp]	43.48	0.8051
					Potri.016G052100 [exp]	43.78	0.8128

Compare expression of checked genes

Potri.011G010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.