Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ALE.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62340 631 / 0 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT5G44530 355 / 3e-113 Subtilase family protein (.1) AT2G19170 354 / 3e-113 SLP3 subtilisin-like serine protease 3 (.1) AT4G20430 348 / 1e-110 Subtilase family protein (.1.2) AT4G30020 342 / 1e-108 PA-domain containing subtilase family protein (.1) AT1G30600 313 / 1e-97 Subtilase family protein (.1) AT1G32960 178 / 3e-48 ATSBT3.3 Subtilase family protein (.1) AT5G59100 173 / 1e-46 Subtilisin-like serine endopeptidase family protein (.1) AT1G32950 171 / 8e-46 Subtilase family protein (.1) AT4G10550 168 / 6e-45 Subtilase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151100 [exp] 374 / 1e-120 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.006G076200 [exp] 354 / 4e-113 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 349 / 2e-111 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G440300 [exp] 333 / 5e-105 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.011G155400 [exp] 331 / 3e-104 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.004G161400 [exp] 197 / 4e-55 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.011G146300 [exp] 189 / 5e-52 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3) Potri.001G450600 [exp] 188 / 1e-51 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.001G455800 [exp] 186 / 7e-51 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015559 [exp] 663 / 0 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 357 / 2e-114 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10000960 [exp] 352 / 4e-112 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001006 [exp] 348 / 2e-111 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10023389 [exp] 338 / 1e-106 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 337 / 4e-106 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10006973 [exp] 333 / 3e-105 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10008060 [exp] 305 / 3e-94 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2) Lus10001310 [exp] 267 / 3e-80 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10023048 [exp] 182 / 1e-49 AT5G59810 762 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Potri.011G010700.5 pacid=42781363 polypeptide=Potri.011G010700.5.p locus=Potri.011G010700 ID=Potri.011G010700.5.v4.1 annot-version=v4.1 ATGGATGGAGTGGACATATTAACACTCTCAGTTGGACCAGATGAACCACCAGAAGATACCATTACATTCTTAAGTGTGTTTGATGTTTTCATGTTATTTG CTCGACGAGCTGGAGTTTTCGTTGCTCAAGCTGCAGGTAACCACGGGCCAGACTTTTCAACTGTTGTATCTTACAGCCCATGGGCTGTAGGTGTAGCTGC TTGCAGCACAGACAGAAGTTACCCCGGTTCTCTTCTTCTTGGAAATGGGCTAAAGGTTGGAGGCGTAGGTTTATCAGGTCCTTCTTTTGGAGACGGGGAG TTTCTGTGTAAGTTGGTGCTGGCTAAAGATGCAGTTAGGGTAAATGGGGCATTCCCAAGGACTCCAGCATATGTTGAAGAATGTCAATTTCCAGAAGCAT TGGACCCTATTATTGTGCGAGGACGAATAGTTATCTGTGTCTTCTCAGCCGGCTTCTATAATGGGACATCAAACATCAATGCCATTATTGACACAGCAAG AACTCTGGGATTTATGGGTTTTGCTTTTGTTGCAAACCCGGCCTACGGTGATTTCATTGCAGAACCTATTCCTTTTGCTGTTTCAGGCATTATAATTCCA AAAGTTGCTGATGCACAGATAATATCTCAGTACTACGAGCAAAATATCCAGAGGGATGAGAGAGGATTTGTGATTCAATACTGTGCAAGAGCAGCTATAA GAGAGGGTAGAGTTGCTTCTTTTGTGGGGCAAGCACCTATTGTCAGCAGATTCTCTTCCAGGGGGCCAGATTTTGTTGACATTAACAGGAATCCTGCCGA TGTACTTAAGCCAGACATTCTTGCCCCAGGACACCAAATATGGGCAGCTTGGAGCCCCCTCAGTGCCTTAGAACCCATACTAACTGGATACCATTTCGCA CTACTGTCTGGTACAAGTATGGCAACACCTCATACAGTGGGAATAGCAGCCCTTATCAAGCAATATAATCCTTCGTGGACTCCATCTATGATTGCATCTG CCATCTCCACTACTGCTACCAAGTATGACAATTATGGAGAAGTCATACTAGCAGAAGGATCTTATCTTAATAGCTACTATCCGTCCACTCATTTCGATAG TGGCGCTGGACTTGTGAATCCTGCTCGTGCTATTGATCCAGGCCTTGTCTTACCCGCAGAATTTGAAGACCACATAAACTTTTTGTGCTCATTGCCTGGT ATTGATTGGTCTGTGATCAATGCTGCAACTGGAGAGAGGTGCAACCGATCGCTTAGCCATCCGGCCAACCTGAACCTACCTTCAGTGACGATATCCACAC TAAGAAACTCTCTAACAGTCAAGCGGAGTCTGAAGAATGGAGGCAGCAGACCAGAGACATACACATGCTCAGTCATATCGCCTAATGGGACCATGGTAAA CTTGTCTCCAACTTGGTTTAGAATAGCTCCACAAGAAATACAAGATATTGAGATACAGTTTCGAGTGATCCAAGCAGGGGGTGAGTTTAGCTTTGGTGAA ATTGTTCTGACAGGAAGTTTAAATCATATTGTCAGACTACCATTATCTGTTTTGCCTATTTCAACATCATAG
AA sequence Show only first row Show all	>Potri.011G010700.5 pacid=42781363 polypeptide=Potri.011G010700.5.p locus=Potri.011G010700 ID=Potri.011G010700.5.v4.1 annot-version=v4.1 MDGVDILTLSVGPDEPPEDTITFLSVFDVFMLFARRAGVFVAQAAGNHGPDFSTVVSYSPWAVGVAACSTDRSYPGSLLLGNGLKVGGVGLSGPSFGDGE FLCKLVLAKDAVRVNGAFPRTPAYVEECQFPEALDPIIVRGRIVICVFSAGFYNGTSNINAIIDTARTLGFMGFAFVANPAYGDFIAEPIPFAVSGIIIP KVADAQIISQYYEQNIQRDERGFVIQYCARAAIREGRVASFVGQAPIVSRFSSRGPDFVDINRNPADVLKPDILAPGHQIWAAWSPLSALEPILTGYHFA LLSGTSMATPHTVGIAALIKQYNPSWTPSMIASAISTTATKYDNYGEVILAEGSYLNSYYPSTHFDSGAGLVNPARAIDPGLVLPAEFEDHINFLCSLPG IDWSVINAATGERCNRSLSHPANLNLPSVTISTLRNSLTVKRSLKNGGSRPETYTCSVISPNGTMVNLSPTWFRIAPQEIQDIEIQFRVIQAGGEFSFGE IVLTGSLNHIVRLPLSVLPISTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Potri.011G010700 [exp]	0	1	Pt-ALE.2
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.001G307500 [exp]	1.41	0.8901
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.014G107900 [exp]	3.87	0.8306
AT3G58610			ketol-acid reductoisomerase (....		Potri.019G089532 [exp]	4.00	0.8131
AT1G60420			DC1 domain-containing protein ...		Potri.010G059700 [exp]	11.48	0.7648
					Potri.016G141150 [exp]	13.96	0.7415
AT1G80040			unknown protein		Potri.005G121100 [exp]	14.49	0.7606
AT5G13200			GRAM domain family protein (.1...		Potri.003G165600 [exp]	17.29	0.7481
AT5G13200			GRAM domain family protein (.1...		Potri.003G165700 [exp]	17.32	0.7581
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Potri.011G122300 [exp]	18.33	0.6996
AT5G13200			GRAM domain family protein (.1...		Potri.003G165400 [exp]	18.33	0.7602

Compare expression of checked genes

Potri.011G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.