Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04210 420 / 5e-149 PUX4 plant UBX domain containing protein 4 (.1) AT4G22150 416 / 1e-146 PUX3 plant UBX domain-containing protein 3 (.1) AT4G15410 312 / 9e-105 PUX5, ATB' GAMMA, ATB'GAMMA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) AT3G21660 150 / 4e-42 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G270300 [exp] 610 / 0 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.004G004200 [exp] 550 / 0 AT4G22150 404 / 2e-141 plant UBX domain-containing protein 3 (.1) Potri.011G005000 [exp] 495 / 2e-179 AT4G04210 358 / 3e-125 plant UBX domain containing protein 4 (.1) Potri.002G225800 [exp] 352 / 1e-120 AT4G15410 362 / 2e-122 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Potri.014G157200 [exp] 329 / 1e-111 AT4G04210 329 / 1e-111 plant UBX domain containing protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030005 [exp] 337 / 4e-114 AT4G15410 407 / 6e-140 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10035318 [exp] 337 / 7e-114 AT4G15410 414 / 3e-142 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10031535 [exp] 320 / 7e-108 AT4G15410 353 / 2e-119 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10015145 [exp] 0 / 1 AT4G15410 184 / 1e-81 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain CL0072 [poplar] [flax] PF08059 [poplar] [flax] SEP SEP domain
Representative CDS sequence Show only first row Show all	>Potri.011G011300.1 pacid=42781137 polypeptide=Potri.011G011300.1.p locus=Potri.011G011300 ID=Potri.011G011300.1.v4.1 annot-version=v4.1 ATGGCGTCAAGGGACAAGAAACCAGCAAAACCCTCAAGCAGTCGAGCCGGAGGTATCCGTACTCTCTCCGATCTGAACCGGCGTTCCGGGCCTGACTCTG ACAGCGACGACGAAGATGCTCCTCAAGAGTACTACACTGGTGGAGAGAAAAGTGGTATGCTTGTCCAAGATCCTACAAAGGGTAATGACGTGGATGCAAT TTTCAATCAAGCTAGACAGCTTGGTGCTGTTGAAGGGCCTTTGGAGAATATTAATCAATCTTCAAGCTCAAGTAGCTTTAGTGGAACTGGTAGATTACTC TCAGGGGAGACTGTACCATCTGCTCCTCAACAACCTGAAGCTGTTGTTCACAATATTGTTTTCTGGACGAATGGTTTCACTGTAAATGATGGCCCTTTGA GGAGTCTGGATGATCCTGAAAATGCATCTTTCTTAGAGAGCATCAGGAAGTCCGAGTGTCCGAAGGAGCTTGAACCAGCGGATAGAAGGTCCTCAGTTCA TGTCAATTTGATTAGGAGGGATCAAAAGTGCCCAGAACCAGAGAGGCAGCGCCATGTTGCATTCCAAGGTGTAGGGAGAACTCTAGGAAGCAGCAGTACT GCACTTGCAACTGAACCAACAGCTGATTCTGCTCCTCTGAACTCTGCTCCAACCCCTTTTATGGGCCTGGTTGTGGATGAAACACTGCCATCGACTTCAA TTCAGCTTAGGCTGGCTGATGGGACACGCATGGTGGCCCACTTTAATAATCATCACACAGTCAATGACATTCGATCCTTCATAGATGCTTCCAGGCCTGG GGCTGCTCTTAATTATCAACTGCAGTTGATGGGGTTCCCACCTAAGCTTCTTACTGATCCAACACAGACAATAGAGCAGGCAGGCCTTGCCAATTCAGTT GTTATTCAGAAATTCTAG
AA sequence Show only first row Show all	>Potri.011G011300.1 pacid=42781137 polypeptide=Potri.011G011300.1.p locus=Potri.011G011300 ID=Potri.011G011300.1.v4.1 annot-version=v4.1 MASRDKKPAKPSSSRAGGIRTLSDLNRRSGPDSDSDDEDAPQEYYTGGEKSGMLVQDPTKGNDVDAIFNQARQLGAVEGPLENINQSSSSSSFSGTGRLL SGETVPSAPQQPEAVVHNIVFWTNGFTVNDGPLRSLDDPENASFLESIRKSECPKELEPADRRSSVHVNLIRRDQKCPEPERQRHVAFQGVGRTLGSSST ALATEPTADSAPLNSAPTPFMGLVVDETLPSTSIQLRLADGTRMVAHFNNHHTVNDIRSFIDASRPGAALNYQLQLMGFPPKLLTDPTQTIEQAGLANSV VIQKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G011300 [exp]	0	1
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.006G270300 [exp]	2.00	0.8890
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.010G237400 [exp]	2.44	0.8207	NFU4.2
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.002G232500 [exp]	3.74	0.7712
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078000 [exp]	4.47	0.8367
AT5G05710			Pleckstrin homology (PH) domai...		Potri.008G066700 [exp]	5.00	0.7287
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.006G126700 [exp]	6.00	0.7565
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.001G105600 [exp]	9.21	0.7473	ATGSTT1.3
AT4G27130			Translation initiation factor ...		Potri.007G122700 [exp]	9.74	0.7983
AT5G42960			unknown protein		Potri.014G181000 [exp]	10.48	0.7610
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Potri.001G354000 [exp]	18.38	0.7281

Compare expression of checked genes

Potri.011G011300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.