Plant FIBer expression Database

Potri.011G015600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12000 635 / 0 Phosphofructokinase family protein (.1)
AT4G04040 603 / 0 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1)
AT1G76550 281 / 1e-89 Phosphofructokinase family protein (.1)
AT1G20950 279 / 8e-89 Phosphofructokinase family protein (.1)
AT4G08876 54 / 1e-09 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G015900
[exp]
695 / 0 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1)
Potri.006G281900
[exp]
695 / 0 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1)
Potri.004G003800
[exp]
647 / 0 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1)
Potri.005G257800
[exp]
288 / 2e-92 AT1G76550 1065 / 0.0 Phosphofructokinase family protein (.1)
Potri.002G003100
[exp]
276 / 1e-87 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038700
[exp]
533 / 0 AT1G12000 875 / 0.0 Phosphofructokinase family protein (.1)
Lus10037972
[exp]
343 / 2e-115 AT4G04040 498 / 9e-173 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1)
Lus10016047
[exp]
280 / 2e-89 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1)
Lus10025167
[exp]
280 / 4e-89 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0240 PFK PF00365 PFK Phosphofructokinase
Representative CDS sequence
>Potri.011G015600.3 pacid=42781793 polypeptide=Potri.011G015600.3.p locus=Potri.011G015600 ID=Potri.011G015600.3.v4.1 annot-version=v4.1
ATGTTTCTTAAGCGGAACGTGATTTCTGATTTGGTTGTTACTTCTTTTGATGGTGATTTGAAATGCAAGGAGGTTCCTACCAGTTTTGGATTTGATACTG
CTTGCAAGATATATGCAGAAATGATTGGAAATGTCATGGTTGATGCTCGATCAACTGGAAAATATTATCACTTTGTCCGGCTTATGGGACGTGCAGCTTC
TCACATTACATTGGAGTGTGCCTTGCAAACTCATCCAAACATCGCCATCATTGGAGAAGAGGTTGCTGCTAAGAAACTGACGCTGAAAAATGTTACAGAT
TACATCGTAAATGTAATCTGTAAACGTTCTGGTCTTGGATATAATTATGGTGTGATTCTTATTCCTGAAGGTTTAATTGATTTCATTCCTGAGGTTCAGC
ACCTTATAGCAGAACTGAATGAGGTTTTGGCCCATGATGTCGTAGATGAAGGTGGGCAATGGAAAAAGAAACTCACAAATCAATCTCTGCAGCTTTTCGA
ATTTTTACCACCAGCAATTCAAGAACAATTGATGCTTGAAAGAGATCCACATGGAAATGTCCAGGTTGCCAAAATTGAGACCGAGAAAATGCTTATTCAA
ATGGTTGAGACTGAGTTGGAGAAGAGGAAGCAAGAAGGTTCATACAAAGGCCATTTCAAAGGACAGTCCCACTTCTTCGGGTATGAAGGAAGATGTGGTT
TGCCTACAAACTTTGATTCTACATACTGCTATGCTTTGGGCTATGGTGCAGGAGCTCTCCTTCACATTGGAAAAACTGGGTTGATATCATCAGTTGGGAA
TTTGGGTGCTCCTGTTGCAGAATGGACAGTTGGAGGGACGGCATTGACTTCTTTGATGGATGTGGAAAGGAGACATGGTAAATTCAAGCCTGTGATCAAG
AAGGCGATGGTAGAGCTTGAAGGTGCACCTTTCAAAAAATTTGCATCCCTGAGGGATGAGTGGGCACTTAAGAATCGGTACATCAGTCCTGGTCCCATCC
AATTCATGGGCCCAGGATCAGATGCCATTAGCCACACTTTACTATTAGAATTGGGAGCTGATGCTTAG
AA sequence
>Potri.011G015600.3 pacid=42781793 polypeptide=Potri.011G015600.3.p locus=Potri.011G015600 ID=Potri.011G015600.3.v4.1 annot-version=v4.1
MFLKRNVISDLVVTSFDGDLKCKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNIAIIGEEVAAKKLTLKNVTD
YIVNVICKRSGLGYNYGVILIPEGLIDFIPEVQHLIAELNEVLAHDVVDEGGQWKKKLTNQSLQLFEFLPPAIQEQLMLERDPHGNVQVAKIETEKMLIQ
MVETELEKRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDSTYCYALGYGAGALLHIGKTGLISSVGNLGAPVAEWTVGGTALTSLMDVERRHGKFKPVIK
KAMVELEGAPFKKFASLRDEWALKNRYISPGPIQFMGPGSDAISHTLLLELGADA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12000 Phosphofructokinase family pro... Potri.011G015600
[exp]
0 1
AT5G37310 Endomembrane protein 70 protei... Potri.004G075450
[exp]
1.00 0.9757
AT3G06035 Glycoprotein membrane precurso... Potri.010G033400
[exp]
1.41 0.9746
AT5G18280 ATAPY2 apyrase 2 (.1.2) Potri.013G053500
[exp]
1.73 0.9689
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Potri.016G088700
[exp]
3.16 0.9651 Pt-FLA11.2
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.008G100000
[exp]
3.74 0.9640 ARF1.3
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Potri.002G222400
[exp]
4.00 0.9639
AT2G30050 transducin family protein / WD... Potri.008G141300
[exp]
4.24 0.9634
AT5G36290 Uncharacterized protein family... Potri.013G086700
[exp]
4.24 0.9650
AT1G48880 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 ... Potri.005G060800
[exp]
4.47 0.9660
AT5G27490 Integral membrane Yip1 family ... Potri.005G033900
[exp]
4.89 0.9591

Potri.011G015600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.