Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 144 / 8e-38 Ankyrin repeat family protein (.1) AT5G04690 135 / 1e-34 Ankyrin repeat family protein (.1) AT5G35810 130 / 3e-34 Ankyrin repeat family protein (.1) AT5G04700 134 / 5e-34 Ankyrin repeat family protein (.1) AT5G04730 133 / 6e-34 Ankyrin-repeat containing protein (.1) AT3G54070 127 / 1e-31 Ankyrin repeat family protein (.1) AT5G04680 118 / 2e-28 Ankyrin repeat family protein (.1) AT4G03500 73 / 1e-13 Ankyrin repeat family protein (.1) AT4G03460 58 / 1e-08 Ankyrin repeat family protein (.1) AT1G03670 57 / 1e-08 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G016300 [exp] 809 / 0 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.006G281600 [exp] 809 / 0 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.011G016200 [exp] 594 / 0 AT3G18670 174 / 6e-47 Ankyrin repeat family protein (.1) Potri.006G281700 [exp] 594 / 0 AT3G18670 174 / 6e-47 Ankyrin repeat family protein (.1) Potri.011G015700 [exp] 589 / 0 AT3G18670 147 / 3e-38 Ankyrin repeat family protein (.1) Potri.006G281800 [exp] 560 / 0 AT3G18670 139 / 7e-35 Ankyrin repeat family protein (.1) Potri.011G016000 [exp] 521 / 0 AT3G18670 137 / 2e-35 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 306 / 3e-97 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.004G003401 [exp] 239 / 4e-72 AT5G35810 154 / 2e-41 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038357 [exp] 183 / 4e-51 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10014701 [exp] 179 / 6e-50 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10014030 [exp] 177 / 5e-49 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10000489 [exp] 174 / 7e-49 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10003282 [exp] 176 / 1e-48 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10019887 [exp] 176 / 3e-48 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10016672 [exp] 159 / 3e-42 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10027721 [exp] 152 / 2e-40 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10035567 [exp] 118 / 4e-29 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10014031 [exp] 86 / 5e-20 ND 146 / 2e-42
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.011G015750.2 pacid=42781473 polypeptide=Potri.011G015750.2.p locus=Potri.011G015750 ID=Potri.011G015750.2.v4.1 annot-version=v4.1 ATGTTGCTGACTTGCCTTATTCCTTGGATAGCTAAATCCTGTTGCAGTACAGCTTGGCAGGAGAAGGTTCAAAATCAAAAGGATAAATATAAATCAGCTG TAGAGCTTGCCAAGCTTTTATCTAGAAATGATACCTCATGGGAAGTTACTTATTCTAGCATTGACCAGAGCAAGCCCAAAATACACAGATATGGAGAGAT AGGTGGGCAAGAAGGGATGTCTTTGGCTGCTAGAATTCCTGAGAGAATGGATGATGTTGGTGAAACTCCTTTGATTTTGGCTACGAAGTCAGGCATTGTG GAGATAGTGGAAGAAATACTCAGGCTTTACCCTCAAGCAGTTGAACATGTTGACGACGAAGGTCGCAATGTGTTGCATGTGGCAATCAAATACAGAGAGT TAAAGATTTTCGAGCTTGTGACGAAAATGGAAGTGCCCATGAAGAGACTGGTAAGAAAGATTGATAACGAGGGGAATTCTATTCTGCACACTGTTGGTGT AAAGAGAAAGGATTTTGTATCTGAGAAGATGGAAGGCCCTGCATTCCTATTACAAGAAGAGTTGCTATGGTTTGAGCGAGTCGAAAAAGTCACTCCACCT CATTTCATAAGCCACCATAACAGTCAGAACCTCTCTGCAGAGTGTTTGTTTATTACTGCAAACTCTGAACTTCGCAGCTCAGCGAAAGAATGGATGAAGA GCACTGCAGAAGGATCTTCGGTCGTGGCTGTTCTGATTGCTACAGTCGCCTTTGCAGCAGCCTACACAGTTCCAGGAGGTCCAAATCAGAGCACCGGTGT TCCTGTCCTCGTTAATAAACCGTTCTTTGTGGTTTTCACTGTCTCGGACGTACTATCTCTTACCTTTGCTTTGACATCAGTTGTGACATTTCTCTCCATC CTCTCATCGCCATTTCGATTTAAAGATTTCAAGCATACCCTTCCCAATAAGTTGATGGCAGGCTTCACATTTCTGTTCCTTTCCGTGGCTATGATGATGG TAGCATTTGGATCAACAATCTTTCTGACGATATACAATAAGGAAAATTGGGCTAAAGTTACTCTATACACAGTCTCTTTTATCCCAGTTTGCATCTTCGC CCTATCTTATTTTCCTCTATATTCCTCACTATCAAAAACTTACAAATATTTGCTCGAAAACTTTCCTCTAACTAAACTTGTTCTATCCAAACCTTGTACG ATGATGTCCAAATGTTTAAAATGTTGTCAAGTCCAAACCTCAGAGTCCCACATTCCATGA
AA sequence Show only first row Show all	>Potri.011G015750.2 pacid=42781473 polypeptide=Potri.011G015750.2.p locus=Potri.011G015750 ID=Potri.011G015750.2.v4.1 annot-version=v4.1 MLLTCLIPWIAKSCCSTAWQEKVQNQKDKYKSAVELAKLLSRNDTSWEVTYSSIDQSKPKIHRYGEIGGQEGMSLAARIPERMDDVGETPLILATKSGIV EIVEEILRLYPQAVEHVDDEGRNVLHVAIKYRELKIFELVTKMEVPMKRLVRKIDNEGNSILHTVGVKRKDFVSEKMEGPAFLLQEELLWFERVEKVTPP HFISHHNSQNLSAECLFITANSELRSSAKEWMKSTAEGSSVVAVLIATVAFAAAYTVPGGPNQSTGVPVLVNKPFFVVFTVSDVLSLTFALTSVVTFLSI LSSPFRFKDFKHTLPNKLMAGFTFLFLSVAMMMVAFGSTIFLTIYNKENWAKVTLYTVSFIPVCIFALSYFPLYSSLSKTYKYLLENFPLTKLVLSKPCT MMSKCLKCCQVQTSESHIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015750 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281600 [exp]	2.44	0.9624
AT5G54980			Uncharacterised protein family...		Potri.008G052451 [exp]	2.82	0.8495
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016300 [exp]	3.00	0.9294
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	3.87	0.8470
AT3G26740		CCL	CCR-like (.1)		Potri.003G163402 [exp]	4.24	0.8120
					Potri.001G388001 [exp]	5.56	0.7581
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	9.89	0.8200
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.017G048400 [exp]	11.83	0.7661
AT2G40410			Staphylococcal nuclease homolo...		Potri.010G182500 [exp]	13.56	0.7480
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.005G239100 [exp]	14.07	0.7915	Pt-GASA1.2

Compare expression of checked genes

Potri.011G015750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.