Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 137 / 9e-36 Ankyrin repeat family protein (.1) AT5G04730 130 / 4e-33 Ankyrin-repeat containing protein (.1) AT5G35810 124 / 3e-32 Ankyrin repeat family protein (.1) AT3G54070 122 / 2e-30 Ankyrin repeat family protein (.1) AT5G04700 121 / 8e-30 Ankyrin repeat family protein (.1) AT5G04690 111 / 2e-26 Ankyrin repeat family protein (.1) AT5G04680 110 / 4e-26 Ankyrin repeat family protein (.1) AT4G03500 66 / 2e-11 Ankyrin repeat family protein (.1) AT4G03460 52 / 5e-07 Ankyrin repeat family protein (.1) AT5G54610 51 / 8e-07 ANK ankyrin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G281800 [exp] 674 / 0 AT3G18670 139 / 7e-35 Ankyrin repeat family protein (.1) Potri.011G015700 [exp] 555 / 0 AT3G18670 147 / 3e-38 Ankyrin repeat family protein (.1) Potri.011G016200 [exp] 554 / 0 AT3G18670 174 / 6e-47 Ankyrin repeat family protein (.1) Potri.006G281700 [exp] 554 / 0 AT3G18670 174 / 6e-47 Ankyrin repeat family protein (.1) Potri.011G015750 [exp] 504 / 2e-179 AT3G18670 144 / 1e-37 Ankyrin repeat family protein (.1) Potri.006G281600 [exp] 504 / 3e-176 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.011G016300 [exp] 504 / 3e-176 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 308 / 2e-98 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.011G019600 [exp] 236 / 3e-75 AT3G18670 137 / 4e-36 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014030 [exp] 174 / 4e-48 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10038357 [exp] 171 / 2e-47 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10003282 [exp] 164 / 2e-44 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10014701 [exp] 161 / 7e-44 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10019887 [exp] 160 / 3e-43 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10000489 [exp] 157 / 5e-43 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10027721 [exp] 155 / 5e-42 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10016672 [exp] 154 / 7e-41 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10035567 [exp] 122 / 9e-31 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10014031 [exp] 77 / 2e-17 ND 146 / 2e-42
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.011G016000.2 pacid=42781679 polypeptide=Potri.011G016000.2.p locus=Potri.011G016000 ID=Potri.011G016000.2.v4.1 annot-version=v4.1 ATGTGGTGGTCCCCCCATCACATGGTGCGGGACCACACAACAATTTCTTCTGGCATCGACGTGATGAAGCCTAAAATTCATAAGTATGGAGAAAAGGGAG GGCAAGAACGGCAAGAAGTACATTTGTATAATACAATTCCAGACCAAATGGAGAGTCGTGCAGAAACTCCTTTGATTTTGGCTACAAAGTCAGGCTGTGT GGAGATTGTTGAGGAAATACTCAAAGCATATCCCCAGGCAGTTGAACACATTGATGATGATGGGAGAAATGTACTGCATGTAGCAATCAAATACCGCCAA CTGAAGATTTTTAAGCTTGTGACACGAATGGAAGTGCCTATGAAGAGGCTGGGAAGGAAGATTGATAAGGATGGGAATTCCATTCTACACAACGTCGGAA AGAAATCGAAGGATGTTGTATCTGATGAGAAGATGGAAGGTCCTGCATTCCTATTACAGGAAGAGTTACTCTGGTTTGAGCGCGTCGAAAAAGTCACTCC ATCCCATTTCCAGGGTCATCGGAACAATAAGATGCTCACTGCAGAAGGGTTTTTCTTTACTGCAAACTCTGAACTCCGCAATTTAGCCAAAGAATGGCTA AAGACAACAGCAGAAGGATGTTCTGTGGTAGCAGTTCTCATTGCCACCGTTGCCTTTGCTGCAGCCTACACGGTTCCAGGAGGTCCGAATCAGAGCACTG GTGTTCCTGTCCTCGTCAACAAACCATTCTTTGTGGTTTTCACTGTGGCAGATGTACTCTCCCTTACCTTTGCTTTGACAGCAGTCGTTACCTTCCTCTC TATCCTATCATCGCCGTTTCGATTTAAAGATTTCAAGCATATACTTCCTAATAAGTTGATGATAGGCTTCACATTTCTGTTCTTTTCCGTGGCTATGATG ATGGTAGCATTTGGAGCAACAATCCTTCTGATGATATACAGTAAGGAAAGTTGGGAAAAAATTACTCTATATGCAGTCTCCTTTATCCCAGTTAGCATCT CTGCACTCGTTTATTTCCCTCTTTATTCATCACTATCAAAAACCTACAATTACTTGCTCAAGAAGATTCCCCTCATTAAACATATTCTAGCTATACCTTG GAAGATCTCCAAATCTTTGAAATGTTGTTGA
AA sequence Show only first row Show all	>Potri.011G016000.2 pacid=42781679 polypeptide=Potri.011G016000.2.p locus=Potri.011G016000 ID=Potri.011G016000.2.v4.1 annot-version=v4.1 MWWSPHHMVRDHTTISSGIDVMKPKIHKYGEKGGQERQEVHLYNTIPDQMESRAETPLILATKSGCVEIVEEILKAYPQAVEHIDDDGRNVLHVAIKYRQ LKIFKLVTRMEVPMKRLGRKIDKDGNSILHNVGKKSKDVVSDEKMEGPAFLLQEELLWFERVEKVTPSHFQGHRNNKMLTAEGFFFTANSELRNLAKEWL KTTAEGCSVVAVLIATVAFAAAYTVPGGPNQSTGVPVLVNKPFFVVFTVADVLSLTFALTAVVTFLSILSSPFRFKDFKHILPNKLMIGFTFLFFSVAMM MVAFGATILLMIYSKESWEKITLYAVSFIPVSISALVYFPLYSSLSKTYNYLLKKIPLIKHILAIPWKISKSLKCC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016000 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281800 [exp]	3.74	0.9491
					Potri.004G011600 [exp]	4.58	0.8827
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.011G150900 [exp]	8.24	0.8532
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.006G085900 [exp]	8.30	0.8531	AS1.1
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.018G057000 [exp]	13.41	0.9008
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Potri.008G137900 [exp]	21.90	0.8868	CRE1.2,PHK2
AT5G07630			lipid transporters (.1)		Potri.003G107501 [exp]	29.29	0.8375
AT5G59990			CCT motif family protein (.1.2...		Potri.001G233600 [exp]	30.06	0.8881
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Potri.008G088200 [exp]	34.81	0.8738
AT1G78940			Protein kinase protein with ad...		Potri.004G170901 [exp]	39.45	0.8816

Compare expression of checked genes

Potri.011G016000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.