Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03500 52 / 3e-07 Ankyrin repeat family protein (.1) AT5G35830 48 / 2e-06 Ankyrin repeat family protein (.1) AT3G09550 44 / 6e-05 Ankyrin repeat family protein (.1) AT5G60070 43 / 0.0002 ankyrin repeat family protein (.1) AT1G07710 42 / 0.0004 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G281800 [exp] 469 / 8e-164 AT3G18670 139 / 7e-35 Ankyrin repeat family protein (.1) Potri.011G016200 [exp] 401 / 2e-137 AT3G18670 174 / 6e-47 Ankyrin repeat family protein (.1) Potri.006G281700 [exp] 401 / 2e-137 AT3G18670 174 / 6e-47 Ankyrin repeat family protein (.1) Potri.011G016300 [exp] 377 / 6e-128 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.006G281600 [exp] 377 / 6e-128 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.011G015801 [exp] 346 / 2e-121 AT3G54070 50 / 4e-07 Ankyrin repeat family protein (.1) Potri.011G015700 [exp] 201 / 5e-61 AT3G18670 147 / 3e-38 Ankyrin repeat family protein (.1) Potri.011G015725 [exp] 162 / 7e-51 ND / Potri.004G003600 [exp] 136 / 4e-36 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003282 [exp] 98 / 1e-22 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10014701 [exp] 84 / 5e-18 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10016672 [exp] 74 / 1e-14 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10025289 [exp] 50 / 1e-06 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10037894 [exp] 49 / 2e-06 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10000916 [exp] 49 / 2e-06 AT1G03670 52 / 1e-06 ankyrin repeat family protein (.1) Lus10038609 [exp] 47 / 8e-06 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10024440 [exp] 47 / 2e-05 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10020209 [exp] 46 / 3e-05 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10003986 [exp] 45 / 4e-05 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.011G016100.3 pacid=42781156 polypeptide=Potri.011G016100.3.p locus=Potri.011G016100 ID=Potri.011G016100.3.v4.1 annot-version=v4.1 ATGCTGCCCTTGATGTCTTCCCGTACTACTGAAATCGATCCTAAACAGAAAATAAACGGAGACTTGTACTGTGCTCTCATGGAAGGAAACACGAAGAGCG TTGCAGATCTCTGCCTGAGGCTTCAGGATCATGCATTGCACGTAATAACAGTAACCGACGATACAGTACTTCACATGGCTACATATGCCAAAGAAGCATC CTTGGTAGAACAATTACTAGATGAGTTGCCTGATCATCATCTCGACAAGTTGACTCGCCAAAATGGTGTAGGAAACACAATCCTCCATGAGACTGCCACA AGCAACCATACTGTAGCTGTTGCACGTAAACTTCTGAAGAAAGCCCCTGGATTGTTAGGCATGCGCAACCACAATGGGGAGACGGCTCTCTTTCGTGCGG CCCGGTATGGAAAAACTGATATGTTCGACTTTCTAGCTGCTAAAGTCCCTGGATATGATGAATCTGGTTTGCAATTCTATGTACAGAGAAGTGATAAAAC CACTATCCTTCACATGGCCATTCTTTCTCTGCATTTTGATTTGGCATACCAAATTGCATCGAAGTACGAACATTTAATTGGTCAAAGAGATGGTGATGGT ATGACTGGTCTTCAGATTTTATCATGCAACCCATCAGTTTTTAAACAAGAGCCTGAAGATGGATTCATTAAGTTAGATTCAACTAAGGGCTACAACAAAT ATATCATCAAGAACAACTTATTCTCGGATTACAACAAGATTAAAGAGAGTAATGTTAGAGAAAAGCTCACAACACTGACAGCCCCGTTTTCTGTCAAAAC GACCAGCTTCCACACCACCAATCTTCAATCCAACCGTTCAGAATGA
AA sequence Show only first row Show all	>Potri.011G016100.3 pacid=42781156 polypeptide=Potri.011G016100.3.p locus=Potri.011G016100 ID=Potri.011G016100.3.v4.1 annot-version=v4.1 MLPLMSSRTTEIDPKQKINGDLYCALMEGNTKSVADLCLRLQDHALHVITVTDDTVLHMATYAKEASLVEQLLDELPDHHLDKLTRQNGVGNTILHETAT SNHTVAVARKLLKKAPGLLGMRNHNGETALFRAARYGKTDMFDFLAAKVPGYDESGLQFYVQRSDKTTILHMAILSLHFDLAYQIASKYEHLIGQRDGDG MTGLQILSCNPSVFKQEPEDGFIKLDSTKGYNKYIIKNNLFSDYNKIKESNVREKLTTLTAPFSVKTTSFHTTNLQSNRSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03500			Ankyrin repeat family protein ...		Potri.011G016100 [exp]	0	1
AT3G17380			TRAF-like family protein (.1)		Potri.003G103200 [exp]	2.23	0.9747
AT3G17380			TRAF-like family protein (.1)		Potri.008G099600 [exp]	2.82	0.9740
					Potri.005G047000 [exp]	3.46	0.9588
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.002G244500 [exp]	3.60	0.9570
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153200 [exp]	4.47	0.9715
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191200 [exp]	4.58	0.9729
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.012G090400 [exp]	5.29	0.9640
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G120000 [exp]	5.91	0.9709
AT5G45480			Protein of unknown function (D...		Potri.016G012400 [exp]	6.63	0.9615
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054800 [exp]	8.83	0.9646

Compare expression of checked genes

Potri.011G016100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.