Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54070 110 / 7e-25 Ankyrin repeat family protein (.1) AT5G35810 96 / 3e-21 Ankyrin repeat family protein (.1) AT3G18670 96 / 3e-20 Ankyrin repeat family protein (.1) AT5G04730 91 / 1e-18 Ankyrin-repeat containing protein (.1) AT1G48720 73 / 2e-15 unknown protein AT5G04700 78 / 1e-14 Ankyrin repeat family protein (.1) AT5G04690 73 / 4e-13 Ankyrin repeat family protein (.1) AT3G20980 62 / 1e-09 Gag-Pol-related retrotransposon family protein (.1) AT5G04680 59 / 8e-09 Ankyrin repeat family protein (.1) AT3G21000 58 / 1e-08 Gag-Pol-related retrotransposon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G281500 [exp] 1387 / 0 AT3G54070 110 / 8e-25 Ankyrin repeat family protein (.1) Potri.011G019500 [exp] 802 / 0 AT3G18670 105 / 2e-23 Ankyrin repeat family protein (.1) Potri.011G019200 [exp] 674 / 0 AT3G18670 137 / 1e-33 Ankyrin repeat family protein (.1) Potri.011G019750 [exp] 647 / 0 AT3G18670 135 / 3e-33 Ankyrin repeat family protein (.1) Potri.011G019600 [exp] 341 / 3e-110 AT3G18670 137 / 4e-36 Ankyrin repeat family protein (.1) Potri.011G016966 [exp] 318 / 4e-102 AT3G54070 51 / 5e-07 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 259 / 7e-75 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.004G003401 [exp] 256 / 2e-74 AT5G35810 154 / 2e-41 Ankyrin repeat family protein (.1) Potri.014G057950 [exp] 221 / 8e-62 AT3G18670 176 / 2e-47 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014701 [exp] 126 / 8e-30 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10003282 [exp] 126 / 1e-29 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10038357 [exp] 126 / 1e-29 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10000489 [exp] 124 / 2e-29 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10016672 [exp] 119 / 3e-27 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10027721 [exp] 114 / 6e-26 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10014030 [exp] 110 / 1e-24 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10019887 [exp] 102 / 7e-22 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10035567 [exp] 88 / 6e-18 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10000916 [exp] 71 / 1e-12 AT1G03670 52 / 1e-06 ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0523 [poplar] [flax] GAG-polyprotein PF13961 [poplar] [flax] DUF4219 Domain of unknown function (DUF4219) CL0523 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.011G016400.1 pacid=42781993 polypeptide=Potri.011G016400.1.p locus=Potri.011G016400 ID=Potri.011G016400.1.v4.1 annot-version=v4.1 ATGGCCACCACAAATTCATTACAATCTATCTCTATGCCACTTCCCATTTTTAATGGTAGCAACTATGATTTGTGGGGGAAAAAAATGAAAACACTCTTCA GGTCTCAAAATCTTTGGGACATTGTTAAGAATGGATATGAGGAGCCAGAAAATATCTCTACTCTAGAAGAAGCACAACGGAAGGAGTTAGAGGTGAAAAA GCAGAAGGATGCTAGTGCCCTTTATTTGATTCAACAATCACTGGCTGATACAATTTTTCCTAGGATTACTGAAGCTTCAACAGCAAAGCAAGCATGGGAT ATATTGCAGAACGAGTTTCTCGGCGATTCTAAGATAGCACCTGAGATAGAACTGGAAGCACCTTATGGGGCAGCCATGAATGGATACTGGCAAAGCATGA TTGACTTCTATCGGGAACATTTCGAAAAAATCGGCTGTCCAGTTACGCCCTCTAAGGATACTGGACTTCATCTAGCTGTGCACAGCAAAAAAGAGCAACC ACTTAAAGCTTTACTTGAAATCATGAAGGAAAGAGAATTACCTGTAACTGAGGAAGAATTTCTCGAGAAAAGAAACGAATTTGGAAATACGGCTCTTCAC GAGGCAACCATCTATGGCAATTACGAGGCTGTAAAGCTCTTGGTAGAACGTTGTCCAGAACTAATTAGGAAAGCAAATCAGTTCGGTGAAACCCCATTGT TTACAGCAGCTGGATTTGCTACGACAGCAATAGTGGAGTTTTTAATCGGATCCAAACGAGAACAATGCGTGGATAATAATGGCTCCCTATTATCAATTCA CAAAAAGCGATCGAAAGATGTCCTGTCCATCCTTAGCGCTGCTATCATAGGGCAAAACTTTGAAACAGCTTTACTGTTGCTAGATCTGGATAAATCGCTC GCCAGCATGAAGGACAAAAATCAAATATCTACTCTTCAACTTCTAGCTGAAATGCCAAATGCTTTTGAGAGTGGATGTCCTATGGGCATATTTGAAGGAC TCATCTACTGTTGCCTTCCTGTTCCACGTCCCTGCGAGGTAAAATCAAAGGTAAAATCAACGGTAGAAAGTTTCCGCCGGGCAAGGAAGGAGGTGGGAGA TCTTGAGAGCGGTCGGGGGAGGAACTCAGGAGATCTGGGGAGTGTCTCGAAGAGGAATCAAAGAGGCGGCCTCCTCAACTATTTAAAGATCCCTGAAGGA TGTTGGCTAGAAAGAATCTGGAACCTGAAAAGAAAGCATGTATTTGCTTATACTTTCGCCGCAAGCCTAATAGAGAAAGATGAGTCATTGAAAAGTGTCA CCATAACAGAGGAAGACCAAAATAAAGAAGAAGAAGGTGAAGAAGAGCAAGAAATGTGTGGGAAAAAAATTAAAAAAGGAGAAAAAACTTCTGAAATCAC TAGCAATGCAAAAGAAACTGAAAGAGCAGAAACTTCTGAAATCACTAGCAATGCAAATGGCACTGAAAGATCAGTACTATCGACATTGTCATCATTAACT AAAAAAAAGGAGATCCCATTGTTTACTGCAACTAGAAGGGGAATACAAGAGATTGTGAAGCTGAAAATAAAACTACATCCTCATGCTATTGACCAGCGCG ATGAAATGAATCGGAGCATTTTGGATGTGGCCGTCATGTATCGCCAGAAAAAGATCTTTGATATTGTGAAGGAAAAGGAAATACCAATGGCTAGAATGCG TCGAGTTGTTGATAAAAGCGGAAACACATTGTTGCACCATGTTGCAGATATGAAGAAAAACAGTGGAGTAACCAAGCCTGGGCCTGCACTCCAACTTCAG GAGGAGTTGAAATGGTTTGAGCGAGTGAAAGAGGAAATTCCTCCTCATTATGTCCCGCTTCTGAACAAAGATGGAATGACTGCAAGAGAGTGCTTCGAAA ATTCGCACGAGATGCAACTGAAACAAGCACAAAAATGGATCAAGGAAACAGCTCAGTCTTGTTCAACTGTAGCTGCACTTGTTGCTACTGTTGTCTTTGC TGCTGCCTATACTGTGCCCGGAGGTTCTGATGAAAAAGGCAAGCCCAACTTCATCAACTCTCCCTATTTTCTGATTTTCACTGTCTCTGATGTTGTCTCC TTAGCAAGCTCCTTGACTTCGCTTGTGGTGTTTCTCTCTTTGCTGACCTCTCCATTTGAGCTACAAGAATTCCACATCTCTCTTCCTCGAAAACTTGTTG TTGGCTTCTCCTTCCTCTTCTTTTCTGTGTTAACGACCATGCTATCCTTTGGCGCAACAATTTTGATACTCATTCAGACAGAGAGGAGGTTGACAACATT ACTCCTTTCCATTGCTTCATTCCTTCCTGTCTTAATATTTGGAATATTGCAATTCCGTCTGTACGTCTCCTTTATGGGCTCTACATTCAACATTCTCAAG AAAAACTGGATAGCTCATCTATCGTTTCTTGGCCCTTGCCTACAATGGAGGGAAAAGCTCGGTCCCAAGAAGAAGGAAAAAAGCTCGAATTGA
AA sequence Show only first row Show all	>Potri.011G016400.1 pacid=42781993 polypeptide=Potri.011G016400.1.p locus=Potri.011G016400 ID=Potri.011G016400.1.v4.1 annot-version=v4.1 MATTNSLQSISMPLPIFNGSNYDLWGKKMKTLFRSQNLWDIVKNGYEEPENISTLEEAQRKELEVKKQKDASALYLIQQSLADTIFPRITEASTAKQAWD ILQNEFLGDSKIAPEIELEAPYGAAMNGYWQSMIDFYREHFEKIGCPVTPSKDTGLHLAVHSKKEQPLKALLEIMKERELPVTEEEFLEKRNEFGNTALH EATIYGNYEAVKLLVERCPELIRKANQFGETPLFTAAGFATTAIVEFLIGSKREQCVDNNGSLLSIHKKRSKDVLSILSAAIIGQNFETALLLLDLDKSL ASMKDKNQISTLQLLAEMPNAFESGCPMGIFEGLIYCCLPVPRPCEVKSKVKSTVESFRRARKEVGDLESGRGRNSGDLGSVSKRNQRGGLLNYLKIPEG CWLERIWNLKRKHVFAYTFAASLIEKDESLKSVTITEEDQNKEEEGEEEQEMCGKKIKKGEKTSEITSNAKETERAETSEITSNANGTERSVLSTLSSLT KKKEIPLFTATRRGIQEIVKLKIKLHPHAIDQRDEMNRSILDVAVMYRQKKIFDIVKEKEIPMARMRRVVDKSGNTLLHHVADMKKNSGVTKPGPALQLQ EELKWFERVKEEIPPHYVPLLNKDGMTARECFENSHEMQLKQAQKWIKETAQSCSTVAALVATVVFAAAYTVPGGSDEKGKPNFINSPYFLIFTVSDVVS LASSLTSLVVFLSLLTSPFELQEFHISLPRKLVVGFSFLFFSVLTTMLSFGATILILIQTERRLTTLLLSIASFLPVLIFGILQFRLYVSFMGSTFNILK KNWIAHLSFLGPCLQWREKLGPKKKEKSSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54070			Ankyrin repeat family protein ...		Potri.011G016400 [exp]	0	1
AT3G54070			Ankyrin repeat family protein ...		Potri.006G281500 [exp]	1.00	1.0000
					Potri.004G166400 [exp]	2.44	0.9872
AT3G54070			Ankyrin repeat family protein ...		Potri.011G016966 [exp]	3.16	0.9894
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.005G254800 [exp]	7.48	0.9851
					Potri.006G196950 [exp]	14.35	0.9397
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.005G156700 [exp]	16.12	0.9137
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019500 [exp]	17.54	0.9561
AT5G20310			Adenine nucleotide alpha hydro...		Potri.018G147200 [exp]	19.07	0.9736
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Potri.006G164980 [exp]	19.89	0.8567
					Potri.009G054450 [exp]	21.28	0.8952

Compare expression of checked genes

Potri.011G016400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.