Plant FIBer expression Database

Potri.011G020800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03965 69 / 4e-15 RING/U-box superfamily protein (.1)
AT4G22250 50 / 5e-08 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G003101
[exp]
124 / 5e-36 AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G020800.1 pacid=42780777 polypeptide=Potri.011G020800.1.p locus=Potri.011G020800 ID=Potri.011G020800.1.v4.1 annot-version=v4.1
ATGAGTCAACTTGGTGTGTTATTGCAGGAGCCAGAAAGAGAAGCACAAACGTTTCTTGCATTGCTCAGAGATCATATGAATGGTACTGCAGATTCTTCAA
GGAGAAGATTGCGAATGAGTCTTAAGGAACGGCTAGGATTAAAAGGGTTGGGTTGTTGTGGGGCCACTTGGGGTTTCAGGGCCACAACCATCACCAATGA
TGATCTTGATCATGAACAAGAAGACATGGAGCTGGTTATGGTAAATTCGGGTCAGGAGGGTACACAGGAGAGGGTTTCTTGTCCGGTCTGTTTGGATCCG
ACCCAACAATATTCTTCGGGTATGAACTTAGCTGCTGCTCTGAAAATAATATCATGGAGCCCACCAATGTTACTAATGATCGCCCAAGCTCAAGCACCTA
TATATCAAACATACATGATCGCCCAAGCTCAAGTTAAAGAATAA
AA sequence
>Potri.011G020800.1 pacid=42780777 polypeptide=Potri.011G020800.1.p locus=Potri.011G020800 ID=Potri.011G020800.1.v4.1 annot-version=v4.1
MSQLGVLLQEPEREAQTFLALLRDHMNGTADSSRRRLRMSLKERLGLKGLGCCGATWGFRATTITNDDLDHEQEDMELVMVNSGQEGTQERVSCPVCLDP
TQQYSSGMNLAAALKIISWSPPMLLMIAQAQAPIYQTYMIAQAQVKE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G03965 RING/U-box superfamily protein... Potri.011G020800
[exp]
0 1
AT4G05050 UBQ11 ubiquitin 11 (.1.2.3.4) Potri.006G045300
[exp]
11.09 0.9452
AT3G14310 ATPME3 pectin methylesterase 3 (.1) Potri.006G256700
[exp]
11.22 0.9465
Potri.003G217600
[exp]
13.63 0.9269
AT1G79480 Carbohydrate-binding X8 domain... Potri.006G008200
[exp]
15.87 0.9441
AT3G30340 nodulin MtN21 /EamA-like trans... Potri.014G108500
[exp]
15.96 0.9418
AT3G03430 Calcium-binding EF-hand family... Potri.014G030800
[exp]
16.79 0.9413
AT4G08300 nodulin MtN21 /EamA-like trans... Potri.005G176200
[exp]
19.62 0.9399
AT3G24060 Plant self-incompatibility pro... Potri.001G053100
[exp]
21.65 0.9057
Potri.007G038000
[exp]
21.81 0.9339
AT3G16360 AHP4 HPT phosphotransmitter 4 (.1.2... Potri.001G189900
[exp]
21.90 0.9381

Potri.011G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.