Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62390 887 / 0 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT2G25290 293 / 1e-87 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT4G32070 289 / 1e-85 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G20360 210 / 2e-57 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 65 / 4e-11 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G14950 54 / 4e-07 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT2G42810 53 / 7e-07 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G56090 49 / 6e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25230 49 / 2e-05 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT1G04190 48 / 2e-05 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G002900 [exp] 1245 / 0 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.006G258300 [exp] 318 / 4e-97 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G023500 [exp] 316 / 2e-96 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G121100 [exp] 291 / 2e-87 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G100700 [exp] 75 / 2e-14 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 70 / 6e-13 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.005G097300 [exp] 51 / 1e-06 AT1G56090 260 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G205300 [exp] 48 / 2e-05 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.002G094800 [exp] 47 / 6e-05 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029481 [exp] 518 / 3e-173 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10039592 [exp] 515 / 4e-172 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10001927 [exp] 299 / 6e-90 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10006196 [exp] 293 / 4e-88 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001947 [exp] 293 / 6e-88 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001948 [exp] 291 / 8e-87 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10008035 [exp] 273 / 1e-80 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10038106 [exp] 270 / 1e-79 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10035117 [exp] 72 / 1e-13 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 72 / 8e-13 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.011G021000.1 pacid=42780275 polypeptide=Potri.011G021000.1.p locus=Potri.011G021000 ID=Potri.011G021000.1.v4.1 annot-version=v4.1 ATGGGGAAATCTGGAGGTAGGAAAAAGAAGGGAAGTGGTGCTGGTGCTAACCAAGCATTAAAAGGGGGAAATAATGGTAATACAAACTCAGTAGCAACCC CAAATGCTAATGGGGGAATTGATTTAAACTCTTTAATATTTTTGAAGAGAGCCCATGAGCTTAAAGAAGAAGGGAACAAGAGGTTTCAAAATAAGGACTT TGCAGGTGCTCTCGATCAATATGACAATGCTCTTCGCTTGATTCCCAAAACACACCCTGACCGTGCTGTATTTCATAGCAACAGGGCTGCATGCTTGATG CAAATGAAGCCTATTGATTATGAGACTGTTATTACTGAGTGTACTATGGCACTTCAAGTGCAGCCTCAGTTTGTCAGGGCTCTTCTTAGGAGGGCTCGGG CATACGAGGCTATTGGTAAGTATGAAATGGCTATGCAGGATGTTCAGGTTTTGTTAGGAGCTGATCCGAATCACCGTGATGCATTGGATATTGCTCGGAG ATTAAGAACTGCATTTGGTCCTCGCCAAGAGGCTCAGCAGGACCTCCAGAGTCGCCCATCCCCTGCTGCCTTAGGGGCATCTGCAGTGCGTGGTGCTCCA ATTGCTGGTCTTGGGCCTTGTTTACCAGCCCGACCGGTATCAAAGAAGGCTGCTGCACCATCTGGGGTATCCCTTGTATCACCTATTAATAAGATGGAAA AGCCTCTGATGAATTCGGTGAGTGAAAATGGTCCTGAGACCAAAAACCAGTTGCCCAAGCTTGTGTTGAAGCCTTCAAGTGGTTCTTCAAAAGCTTCTGC CAATCCAGGAAAGGATAGACAGGGAAAGGGATCCTTATCTTCCTCAGTGTCACTGCCTAGACAGGTTTCAGAGGTGCCAGTTCGATTAAGACCATTGAAA CTTGTCTATGACCATGACATAAGGCTAGCACAGATGCCAGTTAATTGTACCTTTAAAGTATTAAGGGAGATAGTGAGCAAGCGTTTTTCGTCATCCAAGT CAGTTTTGATTAAATACAAAGATACTGATGGTGATTTGGTGACTATAACATGCACAACCGAACTCAGACTAGCAGAGTCCTCTGTAGACAGCCTTTTGGT AAAGGAGCCTGGTACAGATAAAACTGATTCGGTTGGGATGCTGAGATTGCATGTTGTTGAGGTGAGTCCAGAGCAAGAGCCACCTTTAGTGGAAGAAGAG GAGGAGGAGGAGGAGGAGGAGGAGAAGCCTCCTGAGAGCGAGGAGAACAAAGGAGATGAAAGTGGGTCTCATTCATCACTCGGTGAATCTGTGTCAGAAG TGATTGATACTGAAATTAATAAGGCAGAGAAAGAAACTACAAAGGAGAAACTAGAAGCCTCAGGAGATCCTGAAAGCAGGGAAGTAGAGATGGATGATTG GTTGTTTGAGTTTGCTCAGTTATTTCGCACCCATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGATTGGGATGGAGCTGTGTTCAGAGGCT CTCGAGGAAACAGTAACAAGTGAAGAAGCTCAAAGCCTTTTCGACAAGGCTGCCTCAAAGTTCCAGGAGGTGGCTGCTTTGGCTTTTTTCAATTGGGGAA ATGTCCATATGTGTGCAGCAAGGAAACGCATACCCTTAGATGAGTCCGCTGGAAAGGAGGTTGTGTCTGCACAGCTTCAAACAGCTTATGAATGGGTTAA GGATAAATATTCTTTGGCCAGAGAAAAGTATGAGGAAGCGCTGTTGATCAAGCCAGATTTCTATGAGGGTTTGCTGGCGCTGGGGCAGCAGCAATTTGAA ATGGCCAAGCTTCATTGGTCATTTGTGCTTGCTAAGAAAATAGATCTTTCGAGCTGGGACTCTGCGGAAACGCTTAAACTCTTTGACAGTGCAGATGAGA AGATGAAAGTGGCTACTGAGATGTGGGAGAAGATGGAGGAACAGAAAGCAAATGAGCTAAAAGATCCAAATGCAAGCAAGAAAGATGAAATGTTGAGAAG AAGGAAGAAACAAGGAAGTAATGTTGAGGGTGAGTCCTCTGAAAGTGGTGCTCAGGGTGAGATTTCACCAGAGGAAGCAGCTGAACAAGCAGCAGTAATG AGATCACAGATACATCTCTTCTGGGGTAACATGCTTTTTGAGCGATCCCAAGTTGAATGCAAATTAGGAATGGATGATTGGAAAAGAAAACTCGATGCTG CAGTTGAGCGCTTTAGGCTTGCTGGAGCCTCTGAAGGTGACATTTCAATGGTTCTGAAGAACCATTGCTCCAACGGAGATGCAGCGGAAGGAGATGACAA GAAGGTTCAGAATTCAAACACTGATAATGTTAATGAAGCTGATAAGAGTGAGGAGGTAAATAAAGTATGA
AA sequence Show only first row Show all	>Potri.011G021000.1 pacid=42780275 polypeptide=Potri.011G021000.1.p locus=Potri.011G021000 ID=Potri.011G021000.1.v4.1 annot-version=v4.1 MGKSGGRKKKGSGAGANQALKGGNNGNTNSVATPNANGGIDLNSLIFLKRAHELKEEGNKRFQNKDFAGALDQYDNALRLIPKTHPDRAVFHSNRAACLM QMKPIDYETVITECTMALQVQPQFVRALLRRARAYEAIGKYEMAMQDVQVLLGADPNHRDALDIARRLRTAFGPRQEAQQDLQSRPSPAALGASAVRGAP IAGLGPCLPARPVSKKAAAPSGVSLVSPINKMEKPLMNSVSENGPETKNQLPKLVLKPSSGSSKASANPGKDRQGKGSLSSSVSLPRQVSEVPVRLRPLK LVYDHDIRLAQMPVNCTFKVLREIVSKRFSSSKSVLIKYKDTDGDLVTITCTTELRLAESSVDSLLVKEPGTDKTDSVGMLRLHVVEVSPEQEPPLVEEE EEEEEEEEKPPESEENKGDESGSHSSLGESVSEVIDTEINKAEKETTKEKLEASGDPESREVEMDDWLFEFAQLFRTHVGIDPDAHIDLHEIGMELCSEA LEETVTSEEAQSLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVSAQLQTAYEWVKDKYSLAREKYEEALLIKPDFYEGLLALGQQQFE MAKLHWSFVLAKKIDLSSWDSAETLKLFDSADEKMKVATEMWEKMEEQKANELKDPNASKKDEMLRRRKKQGSNVEGESSESGAQGEISPEEAAEQAAVM RSQIHLFWGNMLFERSQVECKLGMDDWKRKLDAAVERFRLAGASEGDISMVLKNHCSNGDAAEGDDKKVQNSNTDNVNEADKSEEVNKV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.011G021000 [exp]	0	1
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.017G053500 [exp]	7.74	0.7672
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G032600 [exp]	9.48	0.8139
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	15.68	0.7991
					Potri.019G108050 [exp]	16.88	0.7725
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.016G077700 [exp]	22.44	0.7796
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	22.53	0.8102
AT2G28605			Photosystem II reaction center...		Potri.005G068500 [exp]	23.49	0.7953
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.001G250900 [exp]	26.05	0.7990
AT1G23180			ARM repeat superfamily protein...		Potri.010G110200 [exp]	27.82	0.7927
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Potri.005G145500 [exp]	39.93	0.7319	LBD37.2

Compare expression of checked genes

Potri.011G021000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.