Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03960 288 / 7e-100 AtPFA-DSP4 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) AT1G05000 282 / 1e-97 AtPFA-DSP1 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT2G32960 253 / 3e-85 AtPFA-DSP2 plant and fungi atypical dual-specificity phosphatase 2, Phosphotyrosine protein phosphatases superfamily protein (.1) AT3G02800 211 / 2e-69 AtPFA-DSP3 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1) AT5G16480 204 / 5e-67 AtPFA-DSP5 plant and fungi atypical dual-specificity phosphatase 5, Phosphotyrosine protein phosphatases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G002800 [exp] 304 / 2e-106 AT1G05000 286 / 4e-99 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.014G159100 [exp] 293 / 1e-101 AT1G05000 310 / 3e-108 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.002G224000 [exp] 288 / 8e-100 AT1G05000 300 / 9e-105 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.013G086500 [exp] 211 / 1e-69 AT3G02800 296 / 2e-103 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031529 [exp] 292 / 1e-101 AT1G05000 304 / 2e-106 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10015154 [exp] 281 / 7e-97 AT1G05000 298 / 3e-103 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10029991 [exp] 280 / 4e-96 AT1G05000 296 / 1e-102 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10035333 [exp] 279 / 6e-96 AT1G05000 291 / 2e-100 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF13350 [poplar] [flax] Y_phosphatase3 Tyrosine phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.011G021100.1 pacid=42781451 polypeptide=Potri.011G021100.1.p locus=Potri.011G021100 ID=Potri.011G021100.1.v4.1 annot-version=v4.1 ATGAAAGTTGATGGCAGTAGTGATTTAGTAGGAGAGAGTGGGACTGTAATTGAGGGGTTGTCGGAATATTATAGATATAGTCCGCCGGCTAAGGTGGCGA TCGGAGAGGAGAGGGAGAGGGAGAGGGAGGGAGAGGAAGAGCTGTTTGTGCCACCGTTGAATTTTGCGATGGTGGATAATGGAATATTCAGGTCGGGTTT CCCTGATATTGCTAACTTCACCTTCTTGCAGTCTCTAAGTCTTCGTTCCATTCTATATTTGTGCCCTGAACCATATCCAGAAGCAAATAGTGATTTTTTG AAGGATAATGGAGTTCAGCTTTTTCAGTTTGGCATGGAGATGTGCAAGGAGCCTTTTGTAAACATCCCAGAGGAAACAATCCGTGAAGCATTGAAAGTAC TCCTTGATGTAAGGAATCACCCCATTTTAATCCACTGCAAGCGAGGAAAGCACCGAACTGGATGTCTGGTGGGATGTTTGAGAAAATTGCAAAGATGGTG CCTGTCATCTATATTTGATGAGTACCAGAGGTTTGCAGCAGCCAAAGCTAGAGTATCAGATCAGAGGTTTATGGAGCTGTTTGACATTTCAAGCTTGAAG AATTTACCTTTGTCCTTTCCTTGTTCAAGCAGATAA
AA sequence Show only first row Show all	>Potri.011G021100.1 pacid=42781451 polypeptide=Potri.011G021100.1.p locus=Potri.011G021100 ID=Potri.011G021100.1.v4.1 annot-version=v4.1 MKVDGSSDLVGESGTVIEGLSEYYRYSPPAKVAIGEEREREREGEEELFVPPLNFAMVDNGIFRSGFPDIANFTFLQSLSLRSILYLCPEPYPEANSDFL KDNGVQLFQFGMEMCKEPFVNIPEETIREALKVLLDVRNHPILIHCKRGKHRTGCLVGCLRKLQRWCLSSIFDEYQRFAAAKARVSDQRFMELFDISSLK NLPLSFPCSSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03960		AtPFA-DSP4	plant and fungi atypical dual-...		Potri.011G021100 [exp]	0	1
AT5G11870			Alkaline phytoceramidase (aPHC...		Potri.006G228700 [exp]	5.83	0.6339
AT5G61340			unknown protein		Potri.004G102800 [exp]	24.24	0.6013
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G236800 [exp]	27.98	0.6203
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G008600 [exp]	28.80	0.6119
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.003G159000 [exp]	57.44	0.4819	ERF1.5
AT4G12230			alpha/beta-Hydrolases superfam...		Potri.003G114900 [exp]	82.61	0.4732
AT1G02610			RING/FYVE/PHD zinc finger supe...		Potri.014G121900 [exp]	97.53	0.5021
AT3G29270			RING/U-box superfamily protein...		Potri.012G067200 [exp]	147.96	0.5249
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Potri.007G030050 [exp]	176.53	0.4864
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G264500 [exp]	237.23	0.4855

Compare expression of checked genes

Potri.011G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.