Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 79 / 4e-16 AtRLP6 receptor like protein 6 (.1) AT3G05660 76 / 4e-15 AtRLP33 receptor like protein 33 (.1) AT3G05650 74 / 1e-14 AtRLP32 receptor like protein 32 (.1) AT1G47890 74 / 1e-14 AtRLP7 receptor like protein 7 (.1) AT3G28890 74 / 2e-14 AtRLP43 receptor like protein 43 (.1.2) AT5G27060 74 / 2e-14 AtRLP53 receptor like protein 53 (.1) AT3G11010 64 / 2e-11 AtRLP34 receptor like protein 34 (.1) AT1G71400 64 / 4e-11 AtRLP12 receptor like protein 12 (.1) AT5G56040 63 / 5e-11 Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G05370 63 / 6e-11 AtRLP31 receptor like protein 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G021400 [exp] 412 / 4e-137 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.016G120600 [exp] 119 / 4e-30 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.016G126900 [exp] 106 / 1e-25 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127101 [exp] 100 / 3e-23 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 96 / 6e-22 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.001G128400 [exp] 87 / 8e-19 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 85 / 3e-18 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G120532 [exp] 82 / 3e-17 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.T125004 [exp] 70 / 3e-13 AT1G45616 384 / 9e-117 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009330 [exp] 131 / 4e-34 AT1G71400 245 / 2e-69 receptor like protein 12 (.1) Lus10002215 [exp] 119 / 3e-30 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10003387 [exp] 115 / 1e-28 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10003389 [exp] 114 / 2e-28 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 108 / 2e-26 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 108 / 5e-26 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10002212 [exp] 105 / 3e-25 AT5G01300 226 / 4e-70 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2) Lus10011039 [exp] 89 / 1e-19 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10000228 [exp] 85 / 2e-18 AT3G05370 231 / 3e-66 receptor like protein 31 (.1) Lus10027580 [exp] 82 / 3e-17 AT5G62230 194 / 4e-53 ERECTA-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G021332.1 pacid=42782136 polypeptide=Potri.011G021332.1.p locus=Potri.011G021332 ID=Potri.011G021332.1.v4.1 annot-version=v4.1 ATGAGAGATTTTCATCATCGTTTACTCTTGTTTCTTTACTTGTTCCTACTCTCTTTGTATCAAGCAAGTATCGCTTCATCTCTGTCAACAGCAACAAAAG CTGCCCACCACCGATGCCGCGATGACCAGAGATCGGCCTTCGCGCAGCTGCAAGAGAACCTTAAATTCCCAGTATCATCTTCAAAAGCTGAGTTGTGGGA CCTGAAAACAGATTGTTGCTCTTGGGAAGGAGTTGCATGTAATGATGTTGGTCATGCCACTCGACTTGACCTGAGTTCTGCGTATGATGAATATGGAGAT TCTATTTCACTCAAAAAGCCAAACCTTGGAATGCTTTTCCAGAATCTCAGTTTTCTAGTAGAGCTCAATCTTGATTATGTAAACATTTCAGCACAAGGTA GCAATTGGTGTGAAGTCATCTCCCATGTGCTTCCCAACCTTAGAGTCTTGAGTTTGTCTGGCTCTGGTCTTTCTGGTCCTCTTTGTTCCTCTCTCTCAAA ACTCCATTTTCTCTCCAAACTCGATCTTCATAGCAATTCCGAACTCTCTTCCATTCCACCCAGTTTCTTAGCAAATTCCTTCAACTTGGAAACTCTTGAC TTATCATATTGTGGCTTGAACGGGAGCTTTCCAAACAACATTTTCCTATTGCCAAAACTACAGTACATTGATCTCTCTGAAAATTTACTCCTTCCAGGTC AGTTTCCAGACTTCTCATTGAATAGTTCTATTCAATACTTGTCACTCAAGAGCACAAGCTTTTCTGGGAACATCCCACTGTCAATCAGCAATCTCAAGTC CTTGAATTATCTAGACCTGAGCAGGTGCAAATTTTATGGAGTTATCCCAGTTTAA
AA sequence Show only first row Show all	>Potri.011G021332.1 pacid=42782136 polypeptide=Potri.011G021332.1.p locus=Potri.011G021332 ID=Potri.011G021332.1.v4.1 annot-version=v4.1 MRDFHHRLLLFLYLFLLSLYQASIASSLSTATKAAHHRCRDDQRSAFAQLQENLKFPVSSSKAELWDLKTDCCSWEGVACNDVGHATRLDLSSAYDEYGD SISLKKPNLGMLFQNLSFLVELNLDYVNISAQGSNWCEVISHVLPNLRVLSLSGSGLSGPLCSSLSKLHFLSKLDLHSNSELSSIPPSFLANSFNLETLD LSYCGLNGSFPNNIFLLPKLQYIDLSENLLLPGQFPDFSLNSSIQYLSLKSTSFSGNIPLSISNLKSLNYLDLSRCKFYGVIPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G021332 [exp]	0	1
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.005G237300 [exp]	2.44	0.9625
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	3.87	0.9675
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	4.24	0.9625
AT5G25840			Protein of unknown function (D...		Potri.003G050200 [exp]	4.47	0.9488
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.002G168600 [exp]	7.48	0.9515
AT1G75100		JAC1	J-domain protein required for ...		Potri.002G134300 [exp]	8.48	0.9472
AT3G52740			unknown protein		Potri.004G202900 [exp]	8.94	0.9544
					Potri.015G143150 [exp]	9.94	0.9482
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Potri.009G077900 [exp]	10.39	0.9533
AT1G75460			ATP-dependent protease La (LON...		Potri.005G232800 [exp]	10.81	0.9461

Compare expression of checked genes

Potri.011G021332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.