Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11080 375 / 2e-114 AtRLP35 receptor like protein 35 (.1) AT1G45616 369 / 2e-111 AtRLP6 receptor like protein 6 (.1) AT3G05660 366 / 2e-111 AtRLP33 receptor like protein 33 (.1) AT3G11010 366 / 2e-111 AtRLP34 receptor like protein 34 (.1) AT4G13920 365 / 4e-111 AtRLP50 receptor like protein 50 (.1) AT5G27060 356 / 4e-107 AtRLP53 receptor like protein 53 (.1) AT3G05650 353 / 7e-107 AtRLP32 receptor like protein 32 (.1) AT2G15080 340 / 3e-101 AtRLP19 receptor like protein 19 (.1.2) AT1G47890 331 / 2e-97 AtRLP7 receptor like protein 7 (.1) AT1G71400 314 / 8e-93 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G021216 [exp] 689 / 0 AT3G05660 256 / 1e-77 receptor like protein 33 (.1) Potri.011G021332 [exp] 437 / 2e-146 AT1G45616 79 / 3e-16 receptor like protein 6 (.1) Potri.001G128400 [exp] 419 / 1e-129 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G127000 [exp] 407 / 1e-125 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.001G437700 [exp] 383 / 1e-116 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.011G104600 [exp] 386 / 5e-116 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.016G120600 [exp] 378 / 1e-113 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.016G127101 [exp] 359 / 5e-108 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.012G027600 [exp] 357 / 4e-106 AT1G71400 395 / 1e-121 receptor like protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 454 / 8e-143 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 428 / 9e-133 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003387 [exp] 412 / 9e-127 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10016402 [exp] 338 / 3e-103 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10004310 [exp] 341 / 1e-102 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10019693 [exp] 318 / 2e-96 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10004313 [exp] 321 / 9e-96 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10042239 [exp] 312 / 3e-90 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10006825 [exp] 310 / 2e-89 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10011039 [exp] 310 / 8e-88 AT3G11010 367 / 5e-110 receptor like protein 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G021400.2 pacid=42781049 polypeptide=Potri.011G021400.2.p locus=Potri.011G021400 ID=Potri.011G021400.2.v4.1 annot-version=v4.1 ATGCAACATCTTTCTCCTACAGGAAAAATGAGAGATTTTCATCATCATTTACTCTTGTTTCTTTACCTGTTCCTACTCTCTTTGTATCAAGCAAGTATCG CTTCATCTCTGTCAACAGCACCAAAAGCTGCCCACCACCGATGCCGCGATGACCAGAGATCGGCCTTCGCGCAGCTGCAAGAGAACCTTAAATTCCCATT ATCATCTTCAAAAGCTGAGTTGTGGGACCTGAAAACAGATTGTTGCTCTTGGGAAGGAGTTACATGTAATGATGTTGGTCGTGCCACTCGACTTGACCTG ATTTCTGCGTATGATGAATATGGAGATTCTATTTCACTTAAAAAGCCAAACCTTGGAATGCTTTTCCAGAATCTCAGTTTTCTAGTAGAGCTCAATCTTG ATTATGTAAACATTTCAGCACAAGGTAGCAATTGGTGTGAAGTCATCTCCCATGTGCTTCCCAACCTCAGAGTCTTGAGTTTGTCTAGCTCTGGTATTTC TGGTCCTCTTTGTTCCTCTCTCTCAAAACTCCATTTTCTCTCTGAACTCCATCTTGACAGCAATTCTGAACTCTCTTCCATTCCACCCAGTTTCTTAGCA AATTCCTCCAACTTGGAAACTCTTGACTTATCAAATTGTGGCTTGAATGGGAGTTTTCCAAACAACATTTTCCTGTTGCCAAAACTACAGCACATTGATC TCTCTGAAAATTTACTCCTTTCAGGTCAGTTTCCAGAATTCTCATTGAATAGTTCTATTCAATCCTTGTTACTCAAGAACACAAACTTTTCTGGGAACAT CCCACTGTCAATCAGCAATCTCAAGTCCTTGAAAGAACTAGACCTGGGTATGTGCAAATTTTATGGAGTTATCCCACCATCACTTGCAAACCTCACCCAA CTTGAAACTCTGGATCTTTCATTTAATAGTTTCAACGGTTCCATTCCTCCATTTCAAAGAGATGGAGTTGCAAACCTTTCATTCCTTTTCTTGGAGCATA ACCAGCTTAACGGAATCCTATATTCTTCTCTATTTACTCTTCCATCCTTGCAGCAATTAGATCTCAGTTCAAACCAATTAAGCGGCAAACTAGATGAGTT TTCAGATGCATCTTCTTCATTGCTGACGATAGAGTTGAGTAACAATAATTTGAGCGGATCAATACCAAGGTCAATCTTCAATCTCCCCAGCCTTATAGAA CTTGATCTTCAAAATAACAAATTTTCTGGCCCCTTGAAGCTTGGTGATTTCAAGAATCAGAGGGATTTAGTATACCTTGCACTTTCTGATGTGTCAGTTG AGAGTGATAACAGCAGCCTTGCTTATGTCCAGCTCGCAACTTTGTATTTGCCCTCTTGCAACTTGACTGAATTTCCAAATTTCCTCAAAACACAAAACAG TTTGACTGTTCTAGATCTTTCCAACAACAGAATTCAAGGTTACGTCCCTAGTTGGATTTGGAAAACAACTCTCACCACATTATACCTTTCCCGCAATCCT GTTGATTTTCCGAAAATTCCTCCTTTTGTCAAGGTAAACCATAGCACACCAATCTACAATGAAGATGGAGTTTCTTCCTTTCCCATGACGTTAGAGAATT TGGGAATGTCATCCTGTAACATAACAGGTAGCTTTCCAGAGTTTATAAAGAACCAAGAGAAGCTAATAAATCTTGACCTTTCAGACAACAAACTCGTTGG TCATATACCCAAGTGGATATGGAACATGAGTCTAAAATATCTAAACCTTTCTTGCAACAAATTTGATTTTTTAGACCAGTTCTCCAATCCCATCTCCCTC CCCTACTCAGATACTCTTATTACTCTTGATCTTCATGCCAATCAATTGCCCGGTTCAATCCCAAAAGCTATATGCAATTGCAGTCAACTCTCTTTGCTTG ACATGTCCCATAACCACCTTAGAAGTCAAATCCCTGATTGTTTGGGAAAAGTTCCTACCCTCACGGTGCTGAATCTACAAGGAAATAACTTCGATTCCAT TTCAAGTTATGCGATAGCAAGTAATCTGCTGTCTCTTAAAATCAGTGACAATAAAGTGGAAGGGAAGTTGCCGCGCTCCTTAGCCAATTGTTCAAAGCTA GAGGTTTTGGATCTTGGAGGCAACATGATACGTGACACATTTCCAGTATGGTTGGAGAAGCTGCCTGCACTAAAAATTCTGGTACTCCAAGCAAATAAAT TTTATGGTCCAATTGGAAATCGTGGTACTGCGACTACTTGGCCAATGTTGCATGTTATGGACCTGTCTTCCAATGAGTTCACTGGCAATCTCTTGAAGGA ATTCGTTCAAAGTTTAGGGGGGATGCAGTTGACCTCCAACAATGAGTCGAGGGCAAGGTATGTTGGAGATAACTACAATATCAATGGACACTACAAGGAG TCGGTAACTATTACGATGAAGGGGCTGAAAATGCATATGGATAGAATAATAACCTTGTTCACTTGTCTTGATCTCTCCAACAATAGTTTCCATGGAGAAA TTCCTGAAGAGATAAGGATTCTCAAATCACTCATCGTCCTCACCTTGTCTCATAATAACTTCCTTGGTCAAATCCCGTCATCATTGAGTGACCTGAGAGA GCTGGAGTCCTTGGACCTGTCAAGCAACCTCCTCTCAGGGGAGATTCCTCCTCAACTTTCAAGGTTGACATTCCTTGCTGTAATGAATCTGTCATATAAC CATCTCGAAGGAAGGATACCACAAGGCAACCAATTTGATATATTTCCCGATTCTTCTTATGAGGGGAACCCAAGGCTATGCGGATTTCCTTTGAAAAGGA AATGCAATCCTGAAGTGAATGAACCTGGTACTCCTCCAGGCGACCACGAGGATTCATGGACAGAGTATATACTTGACTGGAAAATTGTGGGGATTGGATA TGCAAGTGGAATAGTAATTGGTTTCTCTGTAGGATACACAATATTAAGTGAGATGAGAATCAAATGGTTTACTGATCTCATAAGGCTAGCAGGAAACAGA GAGAGATGGTTCAACCAAGGCCAGAGGAGTCTTCAAAGTTGGTGA
AA sequence Show only first row Show all	>Potri.011G021400.2 pacid=42781049 polypeptide=Potri.011G021400.2.p locus=Potri.011G021400 ID=Potri.011G021400.2.v4.1 annot-version=v4.1 MQHLSPTGKMRDFHHHLLLFLYLFLLSLYQASIASSLSTAPKAAHHRCRDDQRSAFAQLQENLKFPLSSSKAELWDLKTDCCSWEGVTCNDVGRATRLDL ISAYDEYGDSISLKKPNLGMLFQNLSFLVELNLDYVNISAQGSNWCEVISHVLPNLRVLSLSSSGISGPLCSSLSKLHFLSELHLDSNSELSSIPPSFLA NSSNLETLDLSNCGLNGSFPNNIFLLPKLQHIDLSENLLLSGQFPEFSLNSSIQSLLLKNTNFSGNIPLSISNLKSLKELDLGMCKFYGVIPPSLANLTQ LETLDLSFNSFNGSIPPFQRDGVANLSFLFLEHNQLNGILYSSLFTLPSLQQLDLSSNQLSGKLDEFSDASSSLLTIELSNNNLSGSIPRSIFNLPSLIE LDLQNNKFSGPLKLGDFKNQRDLVYLALSDVSVESDNSSLAYVQLATLYLPSCNLTEFPNFLKTQNSLTVLDLSNNRIQGYVPSWIWKTTLTTLYLSRNP VDFPKIPPFVKVNHSTPIYNEDGVSSFPMTLENLGMSSCNITGSFPEFIKNQEKLINLDLSDNKLVGHIPKWIWNMSLKYLNLSCNKFDFLDQFSNPISL PYSDTLITLDLHANQLPGSIPKAICNCSQLSLLDMSHNHLRSQIPDCLGKVPTLTVLNLQGNNFDSISSYAIASNLLSLKISDNKVEGKLPRSLANCSKL EVLDLGGNMIRDTFPVWLEKLPALKILVLQANKFYGPIGNRGTATTWPMLHVMDLSSNEFTGNLLKEFVQSLGGMQLTSNNESRARYVGDNYNINGHYKE SVTITMKGLKMHMDRIITLFTCLDLSNNSFHGEIPEEIRILKSLIVLTLSHNNFLGQIPSSLSDLRELESLDLSSNLLSGEIPPQLSRLTFLAVMNLSYN HLEGRIPQGNQFDIFPDSSYEGNPRLCGFPLKRKCNPEVNEPGTPPGDHEDSWTEYILDWKIVGIGYASGIVIGFSVGYTILSEMRIKWFTDLIRLAGNR ERWFNQGQRSLQSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.011G021400 [exp]	0	1
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G109000 [exp]	3.00	0.9465
AT5G51110			Transcriptional coactivator/pt...		Potri.012G112400 [exp]	4.89	0.9460
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152080 [exp]	5.09	0.9464
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.016G065300 [exp]	5.83	0.9141
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011302 [exp]	8.48	0.9261
AT5G22390			Protein of unknown function (D...		Potri.009G162800 [exp]	9.48	0.8930
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	16.24	0.9228
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007600 [exp]	16.70	0.9242
					Potri.004G140000 [exp]	17.49	0.9117
AT1G33110			MATE efflux family protein (.1...		Potri.013G069700 [exp]	17.94	0.9167

Compare expression of checked genes

Potri.011G021400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.