Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32950 686 / 0 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G53090 330 / 5e-105 SPA4 SPA1-related 4 (.1.2) AT2G46340 324 / 8e-101 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT3G15354 312 / 1e-97 SPA3 SPA1-related 3 (.1) AT4G11110 315 / 4e-97 SPA2 SPA1-related 2 (.1) AT5G23730 182 / 5e-53 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 170 / 4e-48 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G05720 59 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 59 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G002700 [exp] 836 / 0 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G159300 [exp] 692 / 0 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G399600 [exp] 337 / 9e-107 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.011G119500 [exp] 337 / 2e-106 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.003G137100 [exp] 332 / 4e-103 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.001G094500 [exp] 322 / 2e-99 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G095300 [exp] 320 / 4e-99 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.012G140200 [exp] 181 / 4e-52 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 180 / 4e-52 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029990 [exp] 691 / 0 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 613 / 0 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10043323 [exp] 325 / 9e-103 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019475 [exp] 322 / 2e-101 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10033942 [exp] 234 / 8e-68 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10032358 [exp] 191 / 2e-52 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10027454 [exp] 115 / 2e-29 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10019476 [exp] 119 / 2e-28 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10005742 [exp] 89 / 3e-19 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 59 / 6e-09 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.011G021700.6 pacid=42781091 polypeptide=Potri.011G021700.6.p locus=Potri.011G021700 ID=Potri.011G021700.6.v4.1 annot-version=v4.1 ATGGCCCTCCTTGCAGAGAAAACGAGAAAGATGGAGCAAGAAGAAGCAGATACAAATATGCGAATTTTACTTGACTTCTTGTATTGCCTCAGCAAGCAAA AGCTTGATGATCTCAATGAGATTCAAACAGATCTCCAGTACATTGAGGAGGACATAAATTATGTGGAGAAGAAAAGAATACAGTTATCCAGGGAAAATGA CAGATTCTCACTGAAACTTGGGATGTTCGCTGATGATCCAAATTCTAAGTTAGTTACTCAATCAGGACCAAATGCATCTAAAAAGAAATGGGTCCGTGCA AAGCTCAATGCTTTGCAAGAATGTTACTTGCAAAAGCGTCGAAATTGGGTTAGACAAGCATGTAAAGAGCAAGAGAGGGGTACAGATACTTCAAATAGAG AAGGATACAATCCAGGCCTTGAGGATTTCCAATCTGTGCTAACCAATTTCACTCGATGCAGTCAATTTAGGGTTGTCGCTGAACTTAGACAAGGTGACCT TTTCCACTCTGCTAACATCGTGTCTAGTATAGAATTTGATCGTGATGATGAACTGTTTGCTACTACTGGAGTTTCTAGGCGCATTAAGATTTTTGAGTTT TCCAAAGTCATGAACGAACCGGAAGATGTGCATTGTCCTGTTGTCGAAATGTCCACGCGATCTAAACTCAGTTGCGTGAGCTGGAACAAGTATATGAAAA ATCATATTGCTAGCAGTGATTATGAGGGGATAGTAACCGTGTGGGATGTAACTACTCGCCAGAGCATAATGGAGTATGAGGAGCACGAAAAGCGAGCTTG GAGTGTTGATTTTTCACAGAATGAACCTTCAATGCTTGTATCTGGGAGCGATGACTGCAAGGTCAAAATTTGGTGCACAAAGCAAGAGGCAAGTGTTCTC AACATTGATATGAAAGCAAATATCTGTTCTGTCAAGTATAATCCTGGATCCAGCATTCATGTGGCGGTGGGATCTGCTGATCATCATATTCACTATTATG ACTTGAGAAACATTAGCCAACCACTTTACGTGTTTAGGGGGCATCGGAAAACTGTTTCATATGTAAAATTTCTATCTAGTGACGAACTGGCTTCTTCATC TACTGACAGCACATTGCGCTTATGGGATGTGAAGGAAAATCTAGCACTGCGTACATTTAGAGGCCATACGAATGAGAGAAACTTTGTGGGTCTTACGGTG AATAGTGAATACATTGCTTGCGGCAGCGAAACGAATGAAGTGTTTGTGTATCACAAGGCCATCTCTAAACCTGCAGCTTCGCATAGATTTAGTACAGATT TGGAGAATGGTGGCGATGATGCTAGATCATACTTCACTAGTGCTGTGTGTTGGAAGAGTGATAGCCCTACAATGCTAACTGCAAATAGTCAAGGAACCAT TAAAGTGCTTGTTCTTGCTGCTTGA
AA sequence Show only first row Show all	>Potri.011G021700.6 pacid=42781091 polypeptide=Potri.011G021700.6.p locus=Potri.011G021700 ID=Potri.011G021700.6.v4.1 annot-version=v4.1 MALLAEKTRKMEQEEADTNMRILLDFLYCLSKQKLDDLNEIQTDLQYIEEDINYVEKKRIQLSRENDRFSLKLGMFADDPNSKLVTQSGPNASKKKWVRA KLNALQECYLQKRRNWVRQACKEQERGTDTSNREGYNPGLEDFQSVLTNFTRCSQFRVVAELRQGDLFHSANIVSSIEFDRDDELFATTGVSRRIKIFEF SKVMNEPEDVHCPVVEMSTRSKLSCVSWNKYMKNHIASSDYEGIVTVWDVTTRQSIMEYEEHEKRAWSVDFSQNEPSMLVSGSDDCKVKIWCTKQEASVL NIDMKANICSVKYNPGSSIHVAVGSADHHIHYYDLRNISQPLYVFRGHRKTVSYVKFLSSDELASSSTDSTLRLWDVKENLALRTFRGHTNERNFVGLTV NSEYIACGSETNEVFVYHKAISKPAASHRFSTDLENGGDDARSYFTSAVCWKSDSPTMLTANSQGTIKVLVLAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Potri.011G021700 [exp]	0	1
					Potri.013G064900 [exp]	4.79	0.8680
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G154550 [exp]	7.34	0.8439
AT5G05800			unknown protein		Potri.008G205550 [exp]	16.24	0.8457
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.016G074200 [exp]	17.29	0.8354
AT4G02235	MADS	AGL51	AGAMOUS-like 51 (.1)		Potri.015G077800 [exp]	20.34	0.7369
AT1G20870			HSP20-like chaperones superfam...		Potri.002G005400 [exp]	21.49	0.8340
AT5G63700			zinc ion binding;DNA binding (...		Potri.011G078050 [exp]	22.18	0.8368
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.001G001700 [exp]	23.97	0.8232
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445150 [exp]	24.73	0.8260
AT3G14470			NB-ARC domain-containing disea...		Potri.013G041800 [exp]	25.03	0.8253

Compare expression of checked genes

Potri.011G021700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.