Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22260 457 / 4e-162 IM1, IM IMMUTANS, Alternative oxidase family protein (.1) AT5G64210 72 / 1e-13 AOX2 alternative oxidase 2 (.1) AT3G22370 66 / 7e-12 AtHSR3, ATAOX1A, AOX1A hyper-sensitivity-related 3, alternative oxidase 1A (.1) AT1G32350 65 / 2e-11 AOX1D alternative oxidase 1D (.1) AT3G22360 61 / 2e-10 AOX1B alternative oxidase 1B (.1) AT3G27620 61 / 2e-10 AOX1C alternative oxidase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G002600 [exp] 551 / 0 AT4G22260 424 / 6e-149 IMMUTANS, Alternative oxidase family protein (.1) Potri.012G001600 [exp] 68 / 2e-12 AT3G22370 475 / 4e-169 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.012G001500 [exp] 66 / 7e-12 AT3G22370 518 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.015G019800 [exp] 64 / 4e-11 AT3G22370 526 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.003G103900 [exp] 62 / 2e-10 AT1G32350 433 / 1e-153 alternative oxidase 1D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002872 [exp] 452 / 3e-158 AT4G22260 466 / 1e-163 IMMUTANS, Alternative oxidase family protein (.1) Lus10037518 [exp] 253 / 1e-82 AT4G22260 273 / 1e-90 IMMUTANS, Alternative oxidase family protein (.1) Lus10020523 [exp] 72 / 1e-13 AT5G64210 462 / 4e-164 alternative oxidase 2 (.1) Lus10005372 [exp] 71 / 3e-13 AT5G64210 453 / 2e-160 alternative oxidase 2 (.1) Lus10035670 [exp] 59 / 1e-09 AT3G22370 519 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF01786 [poplar] [flax] AOX Alternative oxidase
Representative CDS sequence Show only first row Show all	>Potri.011G021800.1 pacid=42781212 polypeptide=Potri.011G021800.1.p locus=Potri.011G021800 ID=Potri.011G021800.1.v4.1 annot-version=v4.1 ATGGCAGCAGCAGGTCTCTCTTCTTCTTCATGTACTGTATTCACACTCTCCTCATCCTTTAAAACCAGAAGACATCTCACTAAAACCCCACAAAACCCTT TGCTTTTCAAACGCAACAACAGCAGCAACCGCACTTCACATCCCTTTCTTCCTTCCAGAAAGTTGTGTAGAGTTCAAGCAACAATTTTGAGAGAAGATGA AGAGAAGAAAGTTGTTGTTGAGGAATCATTTCAACCAAAGACTTTCACTCATGAGCCTGTTCGGGGCTCACCACAATCTTCATCGCCTGGTGGATTAGAG ACTTGGGCTATCAAGCTTGAGCAATCTGTCAATGTCTTTCTCACTGATTCGGTGATAAAAATTCTTGATACTCTTTATCACGACCGCGATTATGCTAGGT TCTTTGTTTTGGAAACTATTGCTAGAGTTCCTTATTTTGCCTTTATATCTGTTCTTCACATGTATGAGAGTTTTGGTTGGTGGAGAAGAGCTGATTATCT CAAAGTGCATTTTGCTGAGAGCTGGAATGAGATGCATCACTTGCTTATCATGGAAGAATTGGGTGGTAATTCTTGGTGGTTTGACCGGCTTCTTGCTCAA GTTATAGCAACCTCTTATTATTTCATGACAGTCTTAATGTATGCATTGAGCCCAAGAATGGCATATCACTTCTCTGAATGTGTTGAGAGCCATGCATTTG CAACTTATGACAAATTTATCAAGGCCCAAGGAGATGATTTGAAAAAATTGCCTGCACCTGAGGTTGCTGTAAAATATTATACCGAGGGTGATTTGTACTT GTTTGATGAATTTCAAACTTCCAGAGCTCCCCATTCTCGTAGGCCAAAAATAGAGAATTTGTATGATGTATTTCTGAACGTCAGAGATGATGAGGCTGAA CATTGTAAGACCATGAAGGCCTGCCAAACACATGGAAATCTCCGCTCTCCACATTCATATCCAGAGGATGCTTTTGAAGATGATACTGGCTGTGATCTTC CTCAAGCAGATTGTGAAGGTATTGTTGATTGTATAAAGAAATCTGTAACATCTCCTCCATCAAAGCAAAATATTTGA
AA sequence Show only first row Show all	>Potri.011G021800.1 pacid=42781212 polypeptide=Potri.011G021800.1.p locus=Potri.011G021800 ID=Potri.011G021800.1.v4.1 annot-version=v4.1 MAAAGLSSSSCTVFTLSSSFKTRRHLTKTPQNPLLFKRNNSSNRTSHPFLPSRKLCRVQATILREDEEKKVVVEESFQPKTFTHEPVRGSPQSSSPGGLE TWAIKLEQSVNVFLTDSVIKILDTLYHDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRLLAQ VIATSYYFMTVLMYALSPRMAYHFSECVESHAFATYDKFIKAQGDDLKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIENLYDVFLNVRDDEAE HCKTMKACQTHGNLRSPHSYPEDAFEDDTGCDLPQADCEGIVDCIKKSVTSPPSKQNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	0	1
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	1.41	0.9748
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	3.16	0.9618
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.001G250500 [exp]	3.46	0.9709
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	3.74	0.9755
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.006G202100 [exp]	3.74	0.9654
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Potri.014G146900 [exp]	3.87	0.9724
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	8.00	0.9650	Pt-CHRC.3
AT3G60690			SAUR-like auxin-responsive pro...		Potri.014G066900 [exp]	8.42	0.9386
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.010G046400 [exp]	8.71	0.9539
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.009G089300 [exp]	8.94	0.9697	Pt-CLPR1.1

Compare expression of checked genes

Potri.011G021800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.