Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25070 74 / 5e-16 RIN4 RPM1 interacting protein 4 (.1) AT5G55850 50 / 5e-08 NOI RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) AT2G04410 49 / 6e-08 RPM1-interacting protein 4 (RIN4) family protein (.1) AT3G48450 49 / 7e-08 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G63270 48 / 2e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT2G17660 45 / 2e-06 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G40645 44 / 2e-06 RPM1-interacting protein 4 (RIN4) family protein (.1) AT4G35655 44 / 3e-06 RPM1-interacting protein 4 (RIN4) family protein (.1) AT3G07195 44 / 2e-05 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G48657 44 / 2e-05 defense protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G002500 [exp] 251 / 5e-85 AT3G25070 75 / 1e-16 RPM1 interacting protein 4 (.1) Potri.002G245400 [exp] 70 / 3e-14 AT3G25070 169 / 3e-52 RPM1 interacting protein 4 (.1) Potri.011G094200 [exp] 49 / 9e-08 AT5G55850 123 / 8e-38 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Potri.012G092601 [exp] 49 / 1e-07 AT2G04410 78 / 3e-20 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.001G368900 [exp] 48 / 1e-07 AT5G55850 124 / 4e-39 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Potri.014G168900 [exp] 47 / 3e-07 AT2G04410 102 / 1e-30 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.015G089201 [exp] 47 / 3e-07 AT2G04410 90 / 1e-25 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.001G338500 [exp] 45 / 8e-07 AT5G40645 82 / 1e-22 RPM1-interacting protein 4 (RIN4) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011841 [exp] 68 / 4e-13 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10006361 [exp] 58 / 2e-11 AT5G55850 73 / 7e-19 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10012316 [exp] 56 / 2e-10 AT5G55850 87 / 4e-24 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10025949 [exp] 49 / 7e-08 AT2G17660 87 / 2e-24 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10022524 [exp] 48 / 1e-07 AT2G04410 104 / 2e-31 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10032112 [exp] 49 / 2e-07 AT5G55850 80 / 1e-20 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10016623 [exp] 47 / 3e-07 AT2G04410 105 / 1e-31 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10036939 [exp] 48 / 4e-07 AT3G25070 52 / 7e-10 RPM1 interacting protein 4 (.1) Lus10006250 [exp] 47 / 6e-07 AT5G55850 52 / 7e-10 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10006451 [exp] 46 / 3e-06 AT3G25070 46 / 2e-07 RPM1 interacting protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05627 [poplar] [flax] AvrRpt-cleavage Cleavage site for pathogenic type III effector avirulence factor Avr
Representative CDS sequence Show only first row Show all	>Potri.011G022000.3 pacid=42782357 polypeptide=Potri.011G022000.3.p locus=Potri.011G022000 ID=Potri.011G022000.3.v4.1 annot-version=v4.1 ATGGCTCAACGTCACCATGTCCCCAAGTTTGGTGGCTGGGATAATGATAATGTTCCTTACACTGCCTACTTCGACACTGCACGCAAGGAAAAATCCGGCA TGAGGATGAACCCAAATGATCCGGAGGAGAATCCAGAGGCCTTCATGCAGGCTAGAGGGGGCATGGAAGATGATGTTGATTTCTCTTCTGGCGCCTATCA GGGAATTACTGCAGAACATCACAACATTGATCAGAGACTCAAAGGGCACAATGCACACGGGACAAGATCTGCTAATGATCATCAGAAGAGTGCAAGCCAC AATAGCATCACATCAGAATCAGGAAGTGAGAAGAGTAGTTCCGAGGGAAATAAAGCCTTGTCTTCATCAAGACATTCTAGACAGAGAAGTAGAAGCACTC ATTCAACTAATCATGATGGTCATCAGAGGGGAGCATCAATTCCCAAATTTGGAGCATGGGATGAAACAGATCCAAACTCAGGTGAAGGTTTTACTGTGGT TTTCAACAGAGTGAAAGAGGAGAAACAAATTGCATCAACGACATTTCCTTCTGTGCCAACCCAACCAGTAAATCGTCAAACTAGTCAAAGAAACCAAGGA AGTTCTTCCTCTCTATCAAAGTTCTGTTGCTGTTTCTTTCCGCGAGGGAAATGA
AA sequence Show only first row Show all	>Potri.011G022000.3 pacid=42782357 polypeptide=Potri.011G022000.3.p locus=Potri.011G022000 ID=Potri.011G022000.3.v4.1 annot-version=v4.1 MAQRHHVPKFGGWDNDNVPYTAYFDTARKEKSGMRMNPNDPEENPEAFMQARGGMEDDVDFSSGAYQGITAEHHNIDQRLKGHNAHGTRSANDHQKSASH NSITSESGSEKSSSEGNKALSSSRHSRQRSRSTHSTNHDGHQRGASIPKFGAWDETDPNSGEGFTVVFNRVKEEKQIASTTFPSVPTQPVNRQTSQRNQG SSSSLSKFCCCFFPRGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.011G022000 [exp]	0	1
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Potri.013G101200 [exp]	2.82	0.8425
					Potri.003G179600 [exp]	23.28	0.8383
					Potri.001G133700 [exp]	36.87	0.7991
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.007G104300 [exp]	47.41	0.7852
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.002G037400 [exp]	99.71	0.7281
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G035100 [exp]	142.95	0.7097
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	179.19	0.7178	Pt-ATCSLC12.1
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	194.48	0.7437
AT4G23020			unknown protein		Potri.001G110900 [exp]	234.40	0.7046
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.003G072700 [exp]	256.58	0.7271	Pt-MPE3.1

Compare expression of checked genes

Potri.011G022000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.