Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05520 877 / 0 ATEHD2 EPS15 homology domain 2 (.1.2) AT3G20290 853 / 0 ATEHD1 EPS15 homology domain 1 (.1.2) AT1G21630 83 / 3e-16 Calcium-binding EF hand family protein (.1.2) AT1G20760 76 / 5e-14 Calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356300 [exp] 883 / 0 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2) Potri.002G008600 [exp] 86 / 2e-17 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 85 / 6e-17 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G102200 [exp] 80 / 3e-15 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.007G063200 [exp] 77 / 1e-14 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043181 [exp] 827 / 0 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10032563 [exp] 816 / 0 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2) Lus10016028 [exp] 85 / 8e-17 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10012248 [exp] 84 / 1e-16 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1) Lus10035983 [exp] 82 / 4e-16 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10016689 [exp] 82 / 5e-16 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family CL0220 [poplar] [flax] EF_hand PF12763 [poplar] [flax] EF-hand_4 Cytoskeletal-regulatory complex EF hand CL0220 [poplar] [flax] PF16880 [poplar] [flax] EHD_N N-terminal EH-domain containing protein
Representative CDS sequence Show only first row Show all	>Potri.011G022300.2 pacid=42782305 polypeptide=Potri.011G022300.2.p locus=Potri.011G022300 ID=Potri.011G022300.2.v4.1 annot-version=v4.1 ATGGAGGAGATAGGGAAAAGTGCAGGCAGTTCCTTCTCAAAAGAACAGCAACAGATCTACAAAGAATGGTTCAATTTAGCCGATTCAGATGGAGATGGCC GCTTTACTGGAAATGACGCTACGAAGTTTTTCGCCATGTCCAATCTTTCTCGCCAACAACTTAAACAAGTCTGGGCACTGGCGGATTCGAAACGACAAGG GTTTTTAGGGCTTACAGAGTTTGTTACGGCAATGCAGCTTGTTTCTCTGGCGCAAGCAGGGCATGAACTAACTCCAGATACTATTAAAACCGCATCTAAA ATGGAGGATGTGAAGCCGCCTTTGATGGATGGCATTGATGCCTTACTAGCTAAAAATAAGAGTTCGAGGATTAGTGAGAATGATATCAATGGATCCACGC AGCTAAGGCTATCAACAGGGACTCCTCAAGTTGGTGCAAAATCATCAAGAAAGATGCCGCTCAATGCAGTTACATCAATTATCGATGGCTTAAAGCGATT GTATATAGAAAAGCTAAAGCCATTGGAAGCTACCTATCATTTTAATGACTTTGTTTCCCCATTGTTGACAAACAGTGATTTTGATGCTAGACCTATGGTT ATGCTTTTGGGTCAGTATTCTACTGGGAAAACAACATTTATAAAACACTTGCTTAGATGTAACTATCCAGGAGCTCACATTGGACCAGAGCCGACAACTG ACAGATTTGTTGTTGTAATGTCTGGACATGATGAAAGGAGCATACCTGGGAACACTGTTGCTGTTCAAGCAGATATGCCATTTAGTGGCCTGACACATTT TGGAGGAGCATTTTTATCAAAGTTTGAGTGTGCACAAATGCCTCATCCATTGCTAGATGAAATCACAATTGTTGACACTCCTGGGGTTCTCTCTGGAGAG AAGCAACGAACACAAAGGAGTTATGATTTTACTGGGGTTATATCATGGTTTGCAGCAAAATGTGATCTGATTCTTCTTTTATTTGATCCTCATAAACTTG ATATCAGTGATGAGTTTAAGCGAGTAATTGCATCTTTACGAGGCAATGATGACAAGATACGAGTTGTGTTGAACAAGGCTGACCAAGTTGATACACAACA GTTGATGAGAGTTTATGGGGCACTAATGTGGTCACTTGGAAAAGTTTTGAACACCCCTGAGGTTATGCGTGTTTATATTGGCTCGTTCAATGACAAACCT ATCAATGAAGAAACTGCTAGCCAAATGTTCTGTGAACTTTTTGAAAAAGAACAAAATGACCTTCTGATGGACTTGGTTGATATTCCTAAGAAAGCTTGTG ATCGTCGAATCAATGAATTTGTAAAGCGTGCTAGAGCTGCTAAGATGCATGCGTACATAATTAGCCATCTCAAGAAGGAGATGCCTGCTATAATGGGCAA GGCTAAGACTCAACAACGCCTTATTGATAATCTTGAAGATGAATTTGCAAAGGTCCAGAGGGAATTTCATTTACCACCTGGAGATTTTCCAAATGTAGAA CACTTCAAAGAAGTCTTGAATGGTTACAGCATTGACAAATTTGAGAAACTGAAGCCTAAGATGATACAAGCTGTTGATGATATGCTTGGCTATGAAATCC CAGAGCTGTTGAAAAGTTTTAGGAATCCTTATGCATAA
AA sequence Show only first row Show all	>Potri.011G022300.2 pacid=42782305 polypeptide=Potri.011G022300.2.p locus=Potri.011G022300 ID=Potri.011G022300.2.v4.1 annot-version=v4.1 MEEIGKSAGSSFSKEQQQIYKEWFNLADSDGDGRFTGNDATKFFAMSNLSRQQLKQVWALADSKRQGFLGLTEFVTAMQLVSLAQAGHELTPDTIKTASK MEDVKPPLMDGIDALLAKNKSSRISENDINGSTQLRLSTGTPQVGAKSSRKMPLNAVTSIIDGLKRLYIEKLKPLEATYHFNDFVSPLLTNSDFDARPMV MLLGQYSTGKTTFIKHLLRCNYPGAHIGPEPTTDRFVVVMSGHDERSIPGNTVAVQADMPFSGLTHFGGAFLSKFECAQMPHPLLDEITIVDTPGVLSGE KQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDKP INEETASQMFCELFEKEQNDLLMDLVDIPKKACDRRINEFVKRARAAKMHAYIISHLKKEMPAIMGKAKTQQRLIDNLEDEFAKVQREFHLPPGDFPNVE HFKEVLNGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKSFRNPYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05520		ATEHD2	EPS15 homology domain 2 (.1.2)		Potri.011G022300 [exp]	0	1
AT4G03100			Rho GTPase activating protein ...		Potri.014G135570 [exp]	3.31	0.9026
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G392200 [exp]	3.74	0.8913	Pt-GF14.4
					Potri.013G133300 [exp]	6.92	0.8597
AT4G29360			O-Glycosyl hydrolases family 1...		Potri.002G007300 [exp]	8.06	0.8754
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	9.79	0.8738
AT1G47740			PPPDE putative thiol peptidase...		Potri.004G151200 [exp]	10.53	0.8290
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.014G050400 [exp]	11.04	0.7893
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.009G058600 [exp]	12.04	0.8312	Pt-SMT.2
AT5G53880			unknown protein		Potri.001G398700 [exp]	13.03	0.8459
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Potri.018G068500 [exp]	13.41	0.8830	Pt-MKK6.1

Compare expression of checked genes

Potri.011G022300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.