Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05530 330 / 4e-115 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT2G29150 117 / 1e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 102 / 1e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 100 / 3e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 97 / 9e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 96 / 3e-23 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29290 94 / 1e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26760 91 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 90 / 3e-21 TRI tropinone reductase (.1) AT1G07450 89 / 4e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022500 [exp] 424 / 5e-152 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.006G206900 [exp] 103 / 2e-26 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 103 / 3e-26 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 99 / 1e-24 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 98 / 4e-24 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G089800 [exp] 97 / 6e-24 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 97 / 1e-23 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 96 / 1e-23 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 96 / 2e-23 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020019 [exp] 352 / 8e-124 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10015542 [exp] 348 / 6e-122 AT4G05530 385 / 2e-136 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001430 [exp] 333 / 6e-116 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001636 [exp] 137 / 1e-40 AT4G05530 174 / 9e-56 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10040735 [exp] 119 / 3e-32 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 114 / 3e-30 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 109 / 2e-28 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 108 / 3e-28 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 107 / 1e-27 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 105 / 7e-27 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.011G022400.1 pacid=42782269 polypeptide=Potri.011G022400.1.p locus=Potri.011G022400 ID=Potri.011G022400.1.v4.1 annot-version=v4.1 ATGAGTAGCAAGATTATCAGTGGAAAGAGGTTTGAAGGGAGAGTGGTAATTGTGACTGCTTCAACACAAGGCATTGGCTTTTCCACAGCTGAAAGGTTTG GATTGGAAGGTGCTTCTGTTGTCATCTCTTCTCGCAAGCAGAAAAATGTAGATGAGGCGGTTGAGAAACTCAAAGCTAAAGGCATCAAGGTGGTGGGTGT TATCTGTCACGTGTCAAATGCGCAACAGAGGAAGAATCTCATAGAGACTACTGTACAGAAATATGGAAAGATAGATGTTGTTGTATCCAATGCTGCTGTC AGTCCATCTTCAGACTCCACTTTGGAAACCCATGAATCTGTCCTTGATAAGCTGTGGGAAATTAATGTTAAAGCAGCTATCCTCCTACTGAAGGATGCGG CCCCTCACATGAAGAAGGGTTCTTCAGTTATTCTGATTTCCTCTATTGGTGGCTACCATGTACATGATTCCTTGGCTATGTATGGTGTCACAAAGACAGC CCTTTTTGGGCTTACCAAGGTGCTTGCAGCTGAGATGGCTCCTCACACTCGAGTGAACTGTATAGCTCCTGGGTTTGTACCAACGCACTTCACTGGTTTC ATTGCAGGCAATCAGGCTCTTAAAAAGTCCATTGAGGATAAGACCTTGCTGAAGAGACTTGGTACCACAGACGACATGGCCTCTACAGTCGCCTTTTTGG CTTCCGATGATGCTTCTTACATAACAGGAGAAACTCTGGTGGTAGCTGGAGGGATGCCGTCCAGACTGTAG
AA sequence Show only first row Show all	>Potri.011G022400.1 pacid=42782269 polypeptide=Potri.011G022400.1.p locus=Potri.011G022400 ID=Potri.011G022400.1.v4.1 annot-version=v4.1 MSSKIISGKRFEGRVVIVTASTQGIGFSTAERFGLEGASVVISSRKQKNVDEAVEKLKAKGIKVVGVICHVSNAQQRKNLIETTVQKYGKIDVVVSNAAV SPSSDSTLETHESVLDKLWEINVKAAILLLKDAAPHMKKGSSVILISSIGGYHVHDSLAMYGVTKTALFGLTKVLAAEMAPHTRVNCIAPGFVPTHFTGF IAGNQALKKSIEDKTLLKRLGTTDDMASTVAFLASDDASYITGETLVVAGGMPSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Potri.011G022400 [exp]	0	1
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Potri.014G029300 [exp]	3.16	0.7969
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069800 [exp]	3.74	0.7852
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040300 [exp]	10.19	0.6499
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Potri.001G146200 [exp]	10.77	0.6436	PtpRR11
AT5G03260		LAC11	laccase 11 (.1)		Potri.007G023300 [exp]	15.29	0.6755
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Potri.013G047200 [exp]	16.24	0.6539	Pt-CKI1.1
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.008G026300 [exp]	16.97	0.6634
					Potri.001G006250 [exp]	22.44	0.7320
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.014G193300 [exp]	25.88	0.6892
AT2G42000		AtMT4a	Arabidopsis thaliana metalloth...		Potri.004G206400 [exp]	28.77	0.7644

Compare expression of checked genes

Potri.011G022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.