Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05530 373 / 5e-132 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT2G29150 127 / 2e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 112 / 7e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 109 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 106 / 3e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 107 / 4e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 105 / 5e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 103 / 2e-26 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT1G07440 102 / 4e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47120 100 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022400 [exp] 454 / 3e-164 AT4G05530 330 / 4e-115 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.006G206900 [exp] 122 / 3e-33 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 115 / 5e-31 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G135510 [exp] 113 / 1e-29 AT4G03140 400 / 8e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 112 / 1e-29 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G089800 [exp] 112 / 2e-29 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 111 / 3e-29 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 111 / 1e-28 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 109 / 1e-28 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020019 [exp] 398 / 9e-142 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10015542 [exp] 396 / 5e-141 AT4G05530 385 / 2e-136 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001430 [exp] 370 / 7e-131 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001636 [exp] 168 / 7e-53 AT4G05530 174 / 9e-56 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10040735 [exp] 126 / 5e-35 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 123 / 9e-34 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 120 / 1e-32 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 120 / 1e-32 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 118 / 8e-32 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 117 / 2e-31 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.011G022500.1 pacid=42780956 polypeptide=Potri.011G022500.1.p locus=Potri.011G022500 ID=Potri.011G022500.1.v4.1 annot-version=v4.1 ATGACTAGTAAGATTATCAGTGGAAAGAGATTTGAAGGGAAAGTGGTAATTGTGACCGCTTCAACTCAAGGTATTGGCTTTTCCATAGCTGAGAGGTTTG GATTGGAAGGTGCTTCTGTTGTTATCTCTTCTCGCAAGCAGAAAAATGTAGATGAGGCAGCTGAGAAACTCAAAGCTAAAGGCATCAAAGTGTTGGGTGT TGTCTGTCACGTATCAAATGCACAACAGAGGAAGAATCTCATAGAGACTACTGTACAGAAATATGGAAAGATAGACATTGTTGTATCCAATGCTGCTGTC AATCCATCTACAGATTCCATTTTGGAAACCCAGGAATCTGTCCTTGATAAGCTGTGGGAAATTAATGTTAAAGCAGCTATCCTCCTACTGAAGGATGCGA CCCCTCACATGAAGAAGGGTTCTTCAGTTATTCTGATTTCCTCTATTGGTGGCTACCATCCACATTCTTCCATGGCTATGTATGGTGTCACAAAGACAGC CCTTTTTGGGCTTACCAAGGTGCTTGCAGCTGAAATGGCTCCTCACACTCGAGTGAACTGTATAGCTCCTGGGTTTGTACCAACACACTTTGCTGATTTC ATTACAGGCAATCAGACCATTAGAAAGACGATTGAGGATCAGACCTTGCTTAAAAGGCTTGGCACCACAGACGACATGGCCTCAGCAGTCGCCTTTTTGG CTTCCGATGATGCTTCTTACATAACAGGAGAAACTTTGGTGGTAGCTGGAGGGATGCCGTCCAGACTTTAG
AA sequence Show only first row Show all	>Potri.011G022500.1 pacid=42780956 polypeptide=Potri.011G022500.1.p locus=Potri.011G022500 ID=Potri.011G022500.1.v4.1 annot-version=v4.1 MTSKIISGKRFEGKVVIVTASTQGIGFSIAERFGLEGASVVISSRKQKNVDEAAEKLKAKGIKVLGVVCHVSNAQQRKNLIETTVQKYGKIDIVVSNAAV NPSTDSILETQESVLDKLWEINVKAAILLLKDATPHMKKGSSVILISSIGGYHPHSSMAMYGVTKTALFGLTKVLAAEMAPHTRVNCIAPGFVPTHFADF ITGNQTIRKTIEDQTLLKRLGTTDDMASAVAFLASDDASYITGETLVVAGGMPSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Potri.011G022500 [exp]	0	1
AT3G53990			Adenine nucleotide alpha hydro...		Potri.016G104600 [exp]	2.64	0.8706
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Potri.008G106300 [exp]	13.63	0.7893
AT5G60570			Galactose oxidase/kelch repeat...		Potri.019G042100 [exp]	15.29	0.8200
AT3G17810		PYD1	pyrimidine 1 (.1)		Potri.015G030600 [exp]	16.79	0.8583
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.004G153400 [exp]	20.78	0.7603	Pt-ACT2.2
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	22.97	0.8464
AT5G61510			GroES-like zinc-binding alcoho...		Potri.004G233800 [exp]	26.53	0.7975	Pt-TED2.2
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	27.44	0.8480
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056366 [exp]	35.21	0.8147
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Potri.009G054800 [exp]	35.98	0.8304

Compare expression of checked genes

Potri.011G022500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.